Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000480.1

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

137854 .. 138514

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000480.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atgtattattctacagactactccgttggacaattttatgacgatgcaaggcaagctacaaggtgtattcttgataatgggcatgttcccatagttactggtggcactggattgtacttgcaatggttaatatatggaaaaccagatgttcccaaagcctcaaaagagatcgcatctgaagtgtcttttgagttggcagatttagaaagaaatggacactgggatgcagctgtgcagttggtgatcaaagcaggtgaccctaaggctcaatttttggctgctaatgattggtaccgattaagacgcagcctggagatcatcaaggttagtctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

111

Amino Acids

12.51

Weight (kDa)

5.58

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	116, 293
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	56, 230
AluI	AGCT	2 cut(s)	56, 230
ApeKI	GCWGC	3 cut(s)	227, 278, 306
Asp718I	GGTACC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	253, 266
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	239, 265, 318
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	3 cut(s)	228, 279, 307
BlsI	GCNGC	3 cut(s)	229, 280, 308
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	3 cut(s)	34, 182, 214
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	332
Bse1I	ACTGG	3 cut(s)	103, 112, 224
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	3 cut(s)	103, 112, 224
BseXI	GCAGC	3 cut(s)	239, 265, 318
BsgI	GTGCAG	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	168, 243, 315
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	103, 112, 224
BssMI	GATC	3 cut(s)	168, 243, 315
Bst2UI	CCWGG	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	171, 246, 318
BstMBI	GATC	3 cut(s)	168, 243, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	239, 265, 318
Bsu36I	CCTNAGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	105, 217
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	54
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	115, 292
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	6 cut(s)	56, 158, 230, 266, 278, 309
CviKI_1	RGCY	6 cut(s)	56, 158, 230, 266, 278, 309
CviQI	GTAC	2 cut(s)	115, 292
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	170, 245, 317
DpnII	GATC	3 cut(s)	168, 243, 315
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	86
FaiI	YATR	5 cut(s)	39, 84, 92, 133, 135
FatI	CATG	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	228, 279, 307
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	228, 279, 307
GluI	GCNGC	3 cut(s)	228, 279, 307
GsuI	CTGGAG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	253, 266
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	47, 121, 227, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	3 cut(s)	168, 243, 315
LpnPI	CCDG	7 cut(s)	84, 93, 156, 205, 237, 296, 323
Lsp1109I	GCAGC	3 cut(s)	239, 265, 318
LweI	GCATC	3 cut(s)	34, 182, 214
MaeIII	GTNAC	2 cut(s)	94, 254
MalI	GATC	3 cut(s)	170, 245, 317
MboI	GATC	3 cut(s)	168, 243, 315
MluCI	AATT	2 cut(s)	32, 269
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	169
MseI	TTAA	2 cut(s)	128, 299
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	3 cut(s)	168, 243, 315
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	229, 280, 308
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	116, 293
RsaNI	GTAC	2 cut(s)	115, 292
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	128, 299
SatI	GCNGC	3 cut(s)	228, 279, 307
Sau3AI	GATC	3 cut(s)	168, 243, 315
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	5 cut(s)	58, 65, 232, 256, 327
SfaNI	GCATC	3 cut(s)	34, 182, 214
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	32, 269
StyD4I	CCNGG	1 cut(s)	309
TasI	AATT	2 cut(s)	32, 269
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	128, 299
Tru9I	TTAA	2 cut(s)	128, 299
TscAI	CASTG	2 cut(s)	112, 224
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	3 cut(s)	227, 278, 306
Tsp45I	GTSAC	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	112, 224
XceI	RCATGY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.