Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

26061588 .. 26067114

Gene Structure 5527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTATATAATATGTAATGGTCTAGCCTCCCATTCGGTTTCCAGTCATCAAAAAAAAAAAAAGATGTTTATTTCTAAAATTTTCAGAGTTATAGGCGATTCAGCGTTTACCGTATATCGGGGTCTTGATGTTGGATCGGCAAAGCCTTCTCCAGGTGATAGAAAGGAAGTACCACATCATCTGGTTGACATATTGCACCCATCTGAAGGTGTACTACTCTGTTGGACAATTTATGAGGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGCCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTCTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTTCTAGTGGATCACCTCCATCTGCCTTCGAAGTACCGTATGATTCTTTCCTCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTCACTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGAGGGAACTGATGGTATCTTGTCTGTGGCCAGATGGCTGCTTGATGCGGGTCTTATTCCAGATTCCAATTCAGCAACCAGAGCAATTGGCTACAGACAAGCTATGGAGTATTTATTATTGCATAGGGAGCAAGGAGGCAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGAAATTTTTCAAAACGGCAATTGACATGGTTTCGTAACGAGCATATCTATCACTGGCTTGACGCTTCCAAACCCTTGTTGTGCTCTCCAATTTTTTTGCAGGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAAAAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTACGTGAAGATTGTTCAGATATTCTAGACTGGATACAGAGAGCACAAGGCAGAAACAATGAATTGTCATTTAATATTCACTTGGTGCTTTATTTTTGCCAAAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

364

Amino Acids

41.26

Weight (kDa)

5.76

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	38 - 279	3.8e-33	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	2 cut(s)	142, 442
AcoI	YGGCCR	2 cut(s)	274, 630
AcsI	RAATTY	3 cut(s)	78, 779, 799
AcuI	CTGAAG	2 cut(s)	225, 393
AdeI	CACNNNGTG	1 cut(s)	1069
AfaI	GTAC	4 cut(s)	171, 213, 311, 459
AfiI	CCNNNNNNNGG	3 cut(s)	117, 152, 206
AgsI	TTSAA	2 cut(s)	785, 807
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	3 cut(s)	251, 425, 704
AluI	AGCT	3 cut(s)	251, 425, 704
Alw21I	GWGCWC	2 cut(s)	881, 1030
AlwI	GGATC	2 cut(s)	142, 442
AoxI	GGCC	2 cut(s)	274, 630
ApeKI	GCWGC	2 cut(s)	422, 640
ApoI	RAATTY	3 cut(s)	78, 779, 799
Asp700I	GAANNNNTTC	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	167, 429, 741
AsuII	TTCGAA	1 cut(s)	453
BalI	TGGCCA	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	881, 1030
BbvI	GCAGC	2 cut(s)	434, 627
BccI	CCATC	5 cut(s)	208, 312, 451, 608, 630
BceAI	ACGGC	2 cut(s)	261, 827
BciT130I	CCWGG	1 cut(s)	153
BciVI	GTATCC	2 cut(s)	892, 1011
BfaI	CTAG	5 cut(s)	23, 429, 492, 795, 1010
BfmI	CTRYAG	1 cut(s)	694
BfuI	GTATCC	2 cut(s)	892, 1011
BisI	GCNGC	2 cut(s)	423, 641
BlsI	GCNGC	2 cut(s)	424, 642
Bme1390I	CCNGG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	6 cut(s)	229, 377, 409, 637, 800, 913
BmuI	ACTGGG	1 cut(s)	424
BoxI	GACNNNNGTC	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 152, 206
Bse1I	ACTGG	6 cut(s)	42, 298, 307, 419, 854, 1019
BseBI	CCWGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	244, 424
BseLI	CCNNNNNNNGG	3 cut(s)	117, 152, 206
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	6 cut(s)	42, 298, 307, 419, 854, 1019
BseXI	GCAGC	2 cut(s)	434, 627
BshFI	GGCC	2 cut(s)	276, 632
BsiHKAI	GWGCWC	2 cut(s)	881, 1030
BslI	CCNNNNNNNGG	3 cut(s)	117, 152, 206
BsnI	GGCC	2 cut(s)	276, 632
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	881, 1030
Bsp143I	GATC	3 cut(s)	134, 363, 434
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	2 cut(s)	276, 632
BspCNI	CTCAG	1 cut(s)	376
BspPI	GGATC	2 cut(s)	142, 442
BspT104I	TTCGAA	1 cut(s)	453
BsrI	ACTGG	6 cut(s)	42, 298, 307, 419, 854, 1019
BssMI	GATC	3 cut(s)	134, 363, 434
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	3 cut(s)	112, 462, 904
BstBAI	YACGTR	1 cut(s)	989
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	244, 424
BstKTI	GATC	3 cut(s)	137, 366, 437
BstMBI	GATC	3 cut(s)	134, 363, 434
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 683, 730
BstNI	CCWGG	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	434, 627
BstV2I	GAAGAC	1 cut(s)	372
BsuI	GTATCC	2 cut(s)	892, 1011
BsuRI	GGCC	2 cut(s)	276, 632
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	244, 424
BtsI	GCAGTG	1 cut(s)	965
BtsIMutI	CAGTG	4 cut(s)	300, 412, 847, 965
Cac8I	GCNNGC	1 cut(s)	249
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	4 cut(s)	170, 212, 310, 458
CviAII	CATG	2 cut(s)	822, 932
CviQI	GTAC	4 cut(s)	170, 212, 310, 458
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	3 cut(s)	136, 365, 436
DpnII	GATC	3 cut(s)	134, 363, 434
DraIII	CACNNNGTG	1 cut(s)	1069
EaeI	YGGCCR	2 cut(s)	274, 630
Eco57I	CTGAAG	2 cut(s)	225, 393
EcoNI	CCTNNNNNAGG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	928
FaeI	CATG	2 cut(s)	825, 935
FatI	CATG	2 cut(s)	821, 931
FauI	CCCGC	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	423, 641
FokI	GGATG	2 cut(s)	251, 431
Fsp4HI	GCNGC	2 cut(s)	423, 641
FspBI	CTAG	5 cut(s)	23, 429, 492, 795, 1010
GluI	GCNGC	2 cut(s)	423, 641
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	276, 632
HgaI	GACGC	1 cut(s)	866
Hin1II	CATG	2 cut(s)	825, 935
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	5 cut(s)	98, 467, 488, 665, 962
HphI	GGTGA	3 cut(s)	167, 429, 741
Hpy166II	GTNNAC	4 cut(s)	108, 187, 212, 502
Hpy188I	TCNGA	6 cut(s)	86, 205, 373, 385, 1003, 1094
Hpy188III	TCNNGA	5 cut(s)	125, 266, 662, 795, 1010
Hpy8I	GTNNAC	4 cut(s)	108, 187, 212, 502
HpyAV	CCTTC	3 cut(s)	156, 200, 460
HpyCH4III	ACNGT	3 cut(s)	112, 462, 904
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	7 cut(s)	196, 242, 422, 724, 895, 926, 970
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 683, 730
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	2 cut(s)	825, 935
Kzo9I	GATC	3 cut(s)	134, 363, 434
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	434, 627
LweI	GCATC	6 cut(s)	229, 377, 409, 637, 800, 913
MaeI	CTAG	5 cut(s)	23, 429, 492, 795, 1010
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	3 cut(s)	289, 518, 830
MalI	GATC	3 cut(s)	136, 365, 436
MboI	GATC	3 cut(s)	134, 363, 434
MboII	GAAGA	4 cut(s)	372, 738, 988, 1004
MfeI	CAATTG	2 cut(s)	687, 815
MhlI	GDGCHC	2 cut(s)	881, 1030
MlsI	TGGCCA	1 cut(s)	632
MluNI	TGGCCA	1 cut(s)	632
MmeI	TCCRAC	2 cut(s)	112, 203
MnlI	CCTC	9 cut(s)	37, 229, 364, 450, 485, 532, 596, 598, 731
Mox20I	TGGCCA	1 cut(s)	632
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	3 cut(s)	323, 546, 1056
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	2 cut(s)	687, 815
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	248, 683, 730
NdeII	GATC	3 cut(s)	134, 363, 434
NlaIII	CATG	2 cut(s)	825, 935
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	928
NspV	TTCGAA	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	5 cut(s)	98, 467, 488, 665, 962
PkrI	GCNGC	2 cut(s)	424, 642
Ppu21I	YACGTR	1 cut(s)	989
PshAI	GACNNNNGTC	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
RsaI	GTAC	4 cut(s)	171, 213, 311, 459
RsaNI	GTAC	4 cut(s)	170, 212, 310, 458
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	323, 546, 1056
SatI	GCNGC	2 cut(s)	423, 641
Sau3AI	GATC	3 cut(s)	134, 363, 434
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	2 cut(s)	881, 1030
SetI	ASST	8 cut(s)	157, 211, 253, 260, 427, 442, 706, 991
SfaNI	GCATC	6 cut(s)	229, 377, 409, 637, 800, 913
SfcI	CTRYAG	1 cut(s)	694
SfuI	TTCGAA	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	417
SsiI	CCGC	1 cut(s)	650
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	5 cut(s)	23, 429, 492, 795, 1010
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	3 cut(s)	112, 462, 904
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	1 cut(s)	453
TatI	WGTACW	2 cut(s)	211, 309
TfiI	GAWTC	5 cut(s)	98, 467, 488, 665, 962
Tru1I	TTAA	3 cut(s)	323, 546, 1056
Tru9I	TTAA	3 cut(s)	323, 546, 1056
TscAI	CASTG	4 cut(s)	307, 419, 854, 972
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	422, 640
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	3 cut(s)	562, 989, 1059
TspRI	CASTG	4 cut(s)	307, 419, 854, 972
XagI	CCTNNNNNAGG	1 cut(s)	150
XapI	RAATTY	3 cut(s)	78, 779, 799
XbaI	TCTAGA	2 cut(s)	794, 1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	5 cut(s)	23, 429, 492, 795, 1010
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.