Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

19520709 .. 19524329

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGATAATCAGTAGCAGTTGTGTCCGTACATTTTGCCCGCGCGTCCTCAGGACGGCTGGGCTGCTGCCTTTCACTCTCCGCCGGCGGCGTCTGACCACCGCCTGCTCTGTTTCAGCCACCAAGAATAAAGAGAAGGAGAAGGTGATAGTGGAATCTGGGCCCACCGGCTCCGGGAAGACCCTCCTCGCTCTGGAGCTCGCTAAGCGGCTCAATGGAGAGATTATAAGCACCGACTCCGTCCAGGATGCTAGGCAAGCTATAAGAAGTATTCTTGATAGTGGCTGGGTTCCCATAGTTACTGGTGGTACTGGATTGTACTTGCGATGGCTCACATACGGAAAACCAGATGTTCCCAAAGCCTCTCTAGAGATTGCATCTGAAGTGTATTCCGATTTAGAGGACCTACAGAAAATTGACGACTGGAATGCAGCTGTGGAGTTGGTGGTCAAGGAAGGTGACTCAAGGGCTCAACTTTTGGCTGCTAATGACTGGTATCGATTAAGACGCAGCCTTGAGATTATTAAGTCTAGTGGATCACCTCCATCTGCATTTCAAGTGCCATATGATTCTTTCCGGAAACAGTGTGATGCAAATGACGCTCGTCCTTCAACTGATGTTGTGGAGGAAGTAAAATCAAAGGCATTGGACTATGATTTTATTTATCTTTTCCTCTCAATCAAAAGAGTTGATCTTTATAAATCAATTGACTACCGATGTGAAGATATGCTATCAGTAAATGATGATATCTTGTCGGAAGCTAATTGGCTTCTTGATTCGGGTCTTCTTCCAAATTCAAATTCAGCAACCAGAGCAATTGGTTACAGACAAAAATCTTGCAAAACGGCAGCTAACATGGTTTCTCAACGAGCGTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

293

Amino Acids

32.53

Weight (kDa)

8.43

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	224, 696
AccII	CGCG	2 cut(s)	40, 42
AccIII	TCCGGA	1 cut(s)	573
AciI	CCGC	5 cut(s)	38, 79, 85, 99, 205
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	2 cut(s)	790, 796
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	88
AfaI	GTAC	3 cut(s)	28, 307, 317
AfiI	CCNNNNNNNGG	3 cut(s)	52, 171, 190
AgsI	TTSAA	3 cut(s)	554, 609, 795
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	781, 813
AluBI	AGCT	5 cut(s)	196, 257, 431, 758, 848
AluI	AGCT	5 cut(s)	196, 257, 431, 758, 848
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	1 cut(s)	158
ApaI	GGGCCC	1 cut(s)	162
ApeKI	GCWGC	6 cut(s)	61, 64, 428, 479, 507, 845
ApoI	RAATTY	2 cut(s)	790, 796
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	158, 159, 400
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	154, 467, 528
AvaII	GGWCC	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	162
BaeI	ACNNNNGTAYC	1 cut(s)	854
BanII	GRGCYC	3 cut(s)	162, 198, 469
BbsI	GAAGAC	2 cut(s)	182, 773
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	6 cut(s)	48, 51, 440, 466, 519, 857
BccI	CCATC	2 cut(s)	318, 550
BceAI	ACGGC	2 cut(s)	69, 858
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	3 cut(s)	249, 365, 528
BfmI	CTRYAG	1 cut(s)	404
BisI	GCNGC	8 cut(s)	62, 65, 86, 206, 429, 480, 508, 846
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	8 cut(s)	63, 66, 87, 207, 430, 481, 509, 847
Bme1390I	CCNGG	2 cut(s)	172, 242
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	158, 159, 400
BmiI	GGNNCC	3 cut(s)	160, 169, 288
BmrFI	CCNGG	2 cut(s)	172, 242
BmsI	GCATC	3 cut(s)	235, 383, 577
BoxI	GACNNNNGTC	1 cut(s)	600
BpiI	GAAGAC	2 cut(s)	182, 773
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	445, 533
BpuMI	CCSGG	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 171, 190
Bse118I	RCCGGY	2 cut(s)	81, 164
Bse1I	ACTGG	4 cut(s)	304, 313, 425, 494
Bse21I	CCTNAGG	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	496
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	52, 171, 190
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	4 cut(s)	304, 313, 425, 494
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	6 cut(s)	48, 51, 440, 466, 519, 857
BseYI	CCCAGC	2 cut(s)	56, 282
Bsh1236I	CGCG	2 cut(s)	40, 42
BshFI	GGCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	82, 165, 171, 574
BslI	CCNNNNNNNGG	3 cut(s)	52, 171, 190
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	162, 198, 469
Bsp13I	TCCGGA	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	533, 688
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	38, 79, 85, 99, 205
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	573
BspFNI	CGCG	2 cut(s)	40, 42
BspLI	GGNNCC	3 cut(s)	160, 169, 288
BspPI	GGATC	1 cut(s)	541
BsrFI	RCCGGY	2 cut(s)	81, 164
BsrI	ACTGG	4 cut(s)	304, 313, 425, 494
BssAI	RCCGGY	2 cut(s)	81, 164
BssMI	GATC	2 cut(s)	533, 688
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	5 cut(s)	38, 83, 103, 198, 255
BstDEI	CTNAG	2 cut(s)	47, 201
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	40, 42
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	2 cut(s)	536, 691
BstMBI	GATC	2 cut(s)	533, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 254, 596, 809
BstNI	CCWGG	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	170, 240
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	2 cut(s)	40, 42
BstV1I	GCAGC	6 cut(s)	48, 51, 440, 466, 519, 857
BstV2I	GAAGAC	2 cut(s)	182, 773
Bsu15I	ATCGAT	1 cut(s)	496
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	5 cut(s)	38, 83, 103, 198, 255
CfoI	GCGC	1 cut(s)	42
Cfr10I	RCCGGY	2 cut(s)	81, 164
Cfr13I	GGNCC	3 cut(s)	158, 159, 400
ClaI	ATCGAT	1 cut(s)	496
CseI	GACGC	4 cut(s)	31, 77, 513, 605
Csp6I	GTAC	3 cut(s)	27, 306, 316
CviAII	CATG	1 cut(s)	853
CviQI	GTAC	3 cut(s)	27, 306, 316
DdeI	CTNAG	2 cut(s)	47, 201
DpnI	GATC	2 cut(s)	535, 690
DpnII	GATC	2 cut(s)	533, 688
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	3 cut(s)	162, 198, 469
Eco32I	GATATC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	745
EcoT38I	GRGCYC	3 cut(s)	162, 198, 469
FaeI	CATG	1 cut(s)	856
FatI	CATG	1 cut(s)	852
FauI	CCCGC	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	8 cut(s)	62, 65, 86, 206, 429, 480, 508, 846
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	3 cut(s)	162, 198, 469
Fsp4HI	GCNGC	8 cut(s)	62, 65, 86, 206, 429, 480, 508, 846
FspBI	CTAG	3 cut(s)	249, 365, 528
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	8 cut(s)	62, 65, 86, 206, 429, 480, 508, 846
GsaI	CCCAGC	2 cut(s)	60, 286
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	4 cut(s)	82, 165, 171, 574
HgaI	GACGC	4 cut(s)	31, 77, 513, 605
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	856
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HinfI	GANTC	5 cut(s)	152, 233, 458, 566, 773
HpaII	CCGG	4 cut(s)	82, 165, 171, 574
HphI	GGTGA	3 cut(s)	154, 467, 528
Hpy188I	TCNGA	4 cut(s)	93, 379, 391, 754
Hpy188III	TCNNGA	6 cut(s)	49, 191, 272, 365, 574, 770
HpyAV	CCTTC	4 cut(s)	127, 133, 446, 615
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4V	TGCA	5 cut(s)	374, 428, 548, 590, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 254, 596, 809
HpyF3I	CTNAG	2 cut(s)	47, 201
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	856
HspAI	GCGC	1 cut(s)	40
Kpn2I	TCCGGA	1 cut(s)	573
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	533, 688
LmnI	GCTCC	2 cut(s)	173, 193
Lsp1109I	GCAGC	6 cut(s)	48, 51, 440, 466, 519, 857
LweI	GCATC	3 cut(s)	235, 383, 577
MaeI	CTAG	3 cut(s)	249, 365, 528
MaeIII	GTNAC	3 cut(s)	295, 455, 818
MalI	GATC	2 cut(s)	535, 690
MboI	GATC	2 cut(s)	533, 688
MboII	GAAGA	4 cut(s)	187, 731, 773, 776
MfeI	CAATTG	2 cut(s)	702, 813
MhlI	GDGCHC	3 cut(s)	162, 198, 469
MluCI	AATT	6 cut(s)	411, 702, 760, 790, 796, 813
MlyI	GAGTC	2 cut(s)	227, 452
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	8 cut(s)	56, 191, 194, 370, 391, 549, 616, 680
MreI	CGCCGGCG	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	573
MroNI	GCCGGC	1 cut(s)	81
MseI	TTAA	2 cut(s)	500, 522
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	4 cut(s)	82, 165, 171, 574
MspR9I	CCNGG	2 cut(s)	172, 242
MunI	CAATTG	2 cut(s)	702, 813
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	40, 42
MwoI	GCNNNNNNNGC	4 cut(s)	202, 254, 596, 809
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	172
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	2 cut(s)	533, 688
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	856
NlaIV	GGNNCC	3 cut(s)	160, 169, 288
NmuCI	GTSAC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	152, 566, 773
PflFI	GACNNNGTC	1 cut(s)	236
PfoI	TCCNGGA	2 cut(s)	170, 240
PkrI	GCNGC	8 cut(s)	63, 66, 87, 207, 430, 481, 509, 847
PleI	GAGTC	2 cut(s)	227, 452
PpsI	GAGTC	2 cut(s)	227, 452
PpuMI	RGGWCCY	1 cut(s)	400
PshAI	GACNNNNGTC	1 cut(s)	600
PsiI	TTATAA	2 cut(s)	224, 696
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	2 cut(s)	56, 282
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	160, 169, 288
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	158, 159, 400
PspPPI	RGGWCCY	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	28, 307, 317
RsaNI	GTAC	3 cut(s)	27, 306, 316
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	500, 522
SatI	GCNGC	8 cut(s)	62, 65, 86, 206, 429, 480, 508, 846
Sau3AI	GATC	2 cut(s)	533, 688
Sau96I	GGNCC	3 cut(s)	158, 159, 400
SchI	GAGTC	2 cut(s)	227, 452
ScrFI	CCNGG	2 cut(s)	172, 242
SduI	GDGCHC	3 cut(s)	162, 198, 469
SetI	ASST	9 cut(s)	144, 198, 259, 405, 433, 457, 541, 760, 850
SfaNI	GCATC	3 cut(s)	235, 383, 577
SfcI	CTRYAG	1 cut(s)	404
SgrAI	CRCCGGYG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	460, 512
SmoI	CTYRAG	2 cut(s)	460, 512
Sse9I	AATT	6 cut(s)	411, 702, 760, 790, 796, 813
SsiI	CCGC	5 cut(s)	38, 79, 85, 99, 205
SspMI	CTAG	3 cut(s)	249, 365, 528
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	170, 240
TaaI	ACNGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	496
TasI	AATT	6 cut(s)	411, 702, 760, 790, 796, 813
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	2 cut(s)	88, 208
TfiI	GAWTC	3 cut(s)	152, 566, 773
Tru1I	TTAA	2 cut(s)	500, 522
Tru9I	TTAA	2 cut(s)	500, 522
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	6 cut(s)	61, 64, 428, 479, 507, 845
Tsp45I	GTSAC	1 cut(s)	455
TspGWI	ACGGA	3 cut(s)	14, 226, 351
TspRI	CASTG	1 cut(s)	587
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	2 cut(s)	790, 796
XbaI	TCTAGA	1 cut(s)	364
XspI	CTAG	3 cut(s)	249, 365, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.