Rmu_sc0000404.1_g000011

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000404.1
Physical Location & Seq
Forward (+)
31125 .. 33933
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000404.1_g000011.1.cds

Sequence Viewer

Length: 837 bp
atgattatcagcagtagcgtccggacatggttcccacgctttccatcctcgtcggagaaacatgtcttccggtcggcagtcaagtttactttcactctccggcggcgacctttcaccaccttgtgctctgtttcggccacccagaagaagaagagcaaggagaaggtgatcgtggtatcggggcccaccggagccgggaagagccggctggcactcgagctcgctaaggtgctcaacggcgagattatcagcgccgactctgtccagtctctacaggttgaattcagatacactctggaatttagagggatgctgttaatatatggaaaaccagatgttcccaaagcctcaaaagagatcgcatctgaagtgtcttctgagttgccagatttagaaagaaatggacactgggatgcagctgttcagttggtgatcaaagcaggtgaccctaaggctcaatttttggctgctaatgattggtaccgatcaagacgcagcctggagatcatcaagtctagtggatcacctccatctgccttcgaagtaccgtatgattctttccccaaagaatgtgattctagtgtagtagacactaatgacattaactcctctgctgatgttttggaggaagttaaatccaaggaattggactatgacttcatttgctttttcctttcaaaccaaagggttgatctatacagatcaattgattggcgatgtgaagatatggtgtcaggaactgatggtatcttgtctgaggccagatggcttcttgatgcgggtcttattccaaattccaattcagcaaccagagcaattggttacagacaagtatag

Protein Analysis

278

Amino Acids

31.07

Weight (kDa)

7.61

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 431
Acc65I GGTACC 1 cut(s) 480
AccB1I GGYRCC 1 cut(s) 480
AccI GTMKAC 1 cut(s) 588
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 103, 779
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 3 cut(s) 281, 299, 793
AcuI CTGAAG 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 123
AfaI GTAC 2 cut(s) 482, 546
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 281, 678
AjnI CCWGG 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 784, 816
AluBI AGCT 2 cut(s) 220, 419
AluI AGCT 2 cut(s) 220, 419
Alw21I GWGCWC 3 cut(s) 128, 222, 234
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 529
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 3 cut(s) 135, 182, 759
ApaI GGGCCC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 416, 467, 495
ApoI RAATTY 3 cut(s) 281, 299, 793
Asp718I GGTACC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 2 cut(s) 182, 183
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 5 cut(s) 106, 178, 442, 455, 516
AsuII TTCGAA 1 cut(s) 540
AvaI CYCGRG 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 480
BanII GRGCYC 2 cut(s) 186, 222
BbsI GAAGAC 2 cut(s) 58, 366
Bbv12I GWGCWC 3 cut(s) 128, 222, 234
BbvI GCAGC 3 cut(s) 428, 454, 507
BccI CCATC 4 cut(s) 52, 538, 737, 759
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 500
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 2 cut(s) 516, 579
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 431
BisI GCNGC 4 cut(s) 104, 417, 468, 496
BlsI GCNGC 4 cut(s) 105, 418, 469, 497
Bme1390I CCNGG 2 cut(s) 196, 500
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 182, 183
BmiI GGNNCC 5 cut(s) 32, 183, 184, 193, 482
BmrFI CCNGG 2 cut(s) 196, 500
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 4 cut(s) 300, 371, 403, 766
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 58, 366
BpmI CTGGAG 1 cut(s) 521
Bpu10I CCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 3 cut(s) 21, 69, 188
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 265, 413
Bse21I CCTNAGG 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 3 cut(s) 44, 315, 418
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 369, 747
BseNI ACTGG 2 cut(s) 265, 413
BseRI GAGGAG 1 cut(s) 598
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 3 cut(s) 428, 454, 507
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 137, 184, 761
BshNI GGYRCC 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 3 cut(s) 128, 222, 234
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 6 cut(s) 22, 70, 100, 189, 195, 205
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 3 cut(s) 137, 184, 761
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 540
Bsp120I GGGCCC 1 cut(s) 182
Bsp1286I GDGCHC 4 cut(s) 128, 186, 222, 234
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
BspACI CCGC 2 cut(s) 103, 779
BspANI GGCC 3 cut(s) 137, 184, 761
BspCNI CTCAG 2 cut(s) 370, 748
BspEI TCCGGA 1 cut(s) 21
BspLI GGNNCC 5 cut(s) 32, 183, 184, 193, 482
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 529
BspQI GCTCTTC 2 cut(s) 146, 194
BspT104I TTCGAA 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 2 cut(s) 265, 413
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 549
Bst6I CTCTTC 2 cut(s) 146, 194
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 3 cut(s) 206, 210, 222
BstDEI CTNAG 4 cut(s) 225, 378, 450, 756
BstEII GGTNACC 1 cut(s) 443
BstF5I GGATG 3 cut(s) 44, 315, 418
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 8 cut(s) 171, 360, 435, 488, 507, 524, 694, 704
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 194, 498
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 3 cut(s) 428, 454, 507
BstV2I GAAGAC 2 cut(s) 58, 366
BstXI CCANNNNNNTGG 1 cut(s) 646
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 3 cut(s) 137, 184, 761
BtgZI GCGATG 1 cut(s) 730
BtsCI GGATG 3 cut(s) 44, 315, 418
BtsIMutI CAGTG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 3 cut(s) 206, 210, 222
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 182, 183
CseI GACGC 2 cut(s) 7, 501
Csp6I GTAC 2 cut(s) 481, 545
CspCI CAANNNNNGTGG 2 cut(s) 499, 534
CviAII CATG 2 cut(s) 27, 62
CviQI GTAC 2 cut(s) 481, 545
DdeI CTNAG 4 cut(s) 225, 378, 450, 756
DpnI GATC 8 cut(s) 170, 359, 434, 487, 506, 523, 693, 703
DpnII GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
DraIII CACNNNGTG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 146, 194
EarI CTCTTC 2 cut(s) 146, 194
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 639
Eco24I GRGCYC 2 cut(s) 186, 222
Eco53kI GAGCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 2 cut(s) 186, 222
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 2 cut(s) 30, 65
FaiI YATR 9 cut(s) 28, 63, 322, 324, 552, 654, 697, 728, 835
FatI CATG 2 cut(s) 26, 61
FauI CCCGC 1 cut(s) 772
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 4 cut(s) 104, 417, 468, 496
FokI GGATG 3 cut(s) 31, 322, 425
FriOI GRGCYC 2 cut(s) 186, 222
Fsp4HI GCNGC 4 cut(s) 104, 417, 468, 496
FspBI CTAG 2 cut(s) 516, 579
GlaI GCGC 1 cut(s) 253
GluI GCNGC 4 cut(s) 104, 417, 468, 496
GsuI CTGGAG 1 cut(s) 521
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 3 cut(s) 137, 184, 761
HapII CCGG 6 cut(s) 22, 70, 100, 189, 195, 205
HgaI GACGC 2 cut(s) 7, 501
HhaI GCGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 30, 65
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 3 cut(s) 257, 554, 575
HpaII CCGG 6 cut(s) 22, 70, 100, 189, 195, 205
HphI GGTGA 5 cut(s) 106, 178, 442, 455, 516
Hpy166II GTNNAC 2 cut(s) 87, 589
Hpy188I TCNGA 5 cut(s) 55, 287, 367, 379, 757
Hpy188III TCNNGA 5 cut(s) 22, 296, 489, 735, 773
Hpy8I GTNNAC 2 cut(s) 87, 589
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 157, 547
HpyCH4III ACNGT 1 cut(s) 549
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 4 cut(s) 225, 378, 450, 756
Hsp92II CATG 2 cut(s) 30, 65
HspAI GCGC 1 cut(s) 252
Kpn2I TCCGGA 1 cut(s) 21
KpnI GGTACC 1 cut(s) 484
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
LguI GCTCTTC 2 cut(s) 146, 194
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 3 cut(s) 428, 454, 507
LweI GCATC 4 cut(s) 300, 371, 403, 766
MaeI CTAG 2 cut(s) 516, 579
MaeIII GTNAC 2 cut(s) 443, 821
MalI GATC 8 cut(s) 170, 359, 434, 487, 506, 523, 693, 703
MboI GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
MboII GAAGA 7 cut(s) 58, 157, 160, 163, 211, 366, 734
MfeI CAATTG 2 cut(s) 705, 816
MhlI GDGCHC 4 cut(s) 128, 186, 222, 234
MluCI AATT 8 cut(s) 281, 299, 458, 644, 705, 793, 799, 816
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 7 cut(s) 58, 299, 358, 537, 619, 619, 751
MroI TCCGGA 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 204
MseI TTAA 3 cut(s) 317, 603, 633
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 6 cut(s) 22, 70, 100, 189, 195, 205
MspR9I CCNGG 2 cut(s) 196, 500
MunI CAATTG 2 cut(s) 705, 816
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 812
NaeI GCCGGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 196
NdeII GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 2 cut(s) 30, 65
NlaIV GGNNCC 5 cut(s) 32, 183, 184, 193, 482
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 1 cut(s) 65
NspV TTCGAA 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 431
PciI ACATGT 1 cut(s) 61
PciSI GCTCTTC 2 cut(s) 146, 194
PdiI GCCGGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 554, 575
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 4 cut(s) 105, 418, 469, 497
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 5 cut(s) 32, 183, 184, 193, 482
PspOMI GGGCCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 182, 183
PspXI VCTCGAGB 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 740
PsyI GACNNNGTC 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 482, 546
RsaNI GTAC 2 cut(s) 481, 545
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 146, 194
SaqAI TTAA 3 cut(s) 317, 603, 633
SatI GCNGC 4 cut(s) 104, 417, 468, 496
Sau3AI GATC 8 cut(s) 168, 357, 432, 485, 504, 521, 691, 701
Sau96I GGNCC 2 cut(s) 182, 183
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 196, 500
SduI GDGCHC 4 cut(s) 128, 186, 222, 234
SetI ASST 9 cut(s) 112, 122, 168, 222, 231, 279, 421, 445, 529
SfaNI GCATC 4 cut(s) 300, 371, 403, 766
SfcI CTRYAG 1 cut(s) 272
Sfr274I CTCGAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 540
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 8 cut(s) 281, 299, 458, 644, 705, 793, 799, 816
SsiI CCGC 2 cut(s) 103, 779
SspMI CTAG 2 cut(s) 516, 579
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 194, 498
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 216, 540
TasI AATT 8 cut(s) 281, 299, 458, 644, 705, 793, 799, 816
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 554, 575
Tru1I TTAA 3 cut(s) 317, 603, 633
Tru9I TTAA 3 cut(s) 317, 603, 633
TscAI CASTG 1 cut(s) 413
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 3 cut(s) 416, 467, 495
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 1 cut(s) 649
TspRI CASTG 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 260
XapI RAATTY 3 cut(s) 281, 299, 793
XceI RCATGY 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 2 cut(s) 516, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.