Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

54480160 .. 54481572

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTATTATTCTTCAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGTCACTGGATTGTACTTGCGATGTCTCTTCCGGTTGAATTCAGATACACTCTGGAATTTAGAGGGATGCTGTTATTTATATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGCTGGTGATCAAAGCAAGTAACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCAGCTCCATCTGCCTTCGAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCAATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTATCTGAGGCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGCTATGGAGTATTTGTTAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

4.71

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 210	1.3e-21	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	381
AciI	CCGC	2 cut(s)	355, 572
AcsI	RAATTY	3 cut(s)	139, 157, 586
AfaI	GTAC	3 cut(s)	116, 275, 339
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AluBI	AGCT	4 cut(s)	56, 212, 220, 320
AluI	AGCT	4 cut(s)	56, 212, 220, 320
Alw26I	GTCTC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	4 cut(s)	209, 217, 260, 288
ApoI	RAATTY	3 cut(s)	139, 157, 586
Asp718I	GGTACC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	333
AxyI	CCTNAGG	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	221, 229, 247, 300
BccI	CCATC	3 cut(s)	331, 530, 552
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	309, 372
BisI	GCNGC	4 cut(s)	210, 218, 261, 289
BlsI	GCNGC	4 cut(s)	211, 219, 262, 290
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	4 cut(s)	34, 158, 196, 559
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	132
BsaXI	ACNNNNNCTCC	1 cut(s)	612
Bse1I	ACTGG	3 cut(s)	103, 112, 206
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	173, 211
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	103, 112, 206
BseXI	GCAGC	4 cut(s)	221, 229, 247, 300
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	225, 297, 314, 484, 494
BspACI	CCGC	2 cut(s)	355, 572
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	3 cut(s)	103, 112, 206
BssMI	GATC	5 cut(s)	225, 297, 314, 484, 494
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	243, 549
BstF5I	GGATG	2 cut(s)	173, 211
BstKTI	GATC	5 cut(s)	228, 300, 317, 487, 497
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	225, 297, 314, 484, 494
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 326, 605
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	221, 229, 247, 300
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	173, 211
BtsIMutI	CAGTG	2 cut(s)	105, 199
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	533
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	115, 274, 338
CviQI	GTAC	3 cut(s)	115, 274, 338
DdeI	CTNAG	2 cut(s)	243, 549
DpnI	GATC	5 cut(s)	227, 299, 316, 486, 496
DpnII	GATC	5 cut(s)	225, 297, 314, 484, 494
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	291
FaiI	YATR	8 cut(s)	39, 92, 181, 345, 447, 490, 521, 618
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	210, 218, 261, 289
FokI	GGATG	2 cut(s)	180, 218
Fsp4HI	GCNGC	4 cut(s)	210, 218, 261, 289
FspBI	CTAG	2 cut(s)	309, 372
GluI	GCNGC	4 cut(s)	210, 218, 261, 289
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	347, 368
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	16, 145, 550
Hpy188III	TCNNGA	4 cut(s)	71, 154, 528, 566
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	47, 209, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 326, 605
HpyF3I	CTNAG	2 cut(s)	243, 549
KpnI	GGTACC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	225, 297, 314, 484, 494
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	4 cut(s)	221, 229, 247, 300
LweI	GCATC	4 cut(s)	34, 158, 196, 559
MaeI	CTAG	2 cut(s)	309, 372
MaeIII	GTNAC	3 cut(s)	94, 103, 236
MalI	GATC	5 cut(s)	227, 299, 316, 486, 496
MboI	GATC	5 cut(s)	225, 297, 314, 484, 494
MboII	GAAGA	3 cut(s)	3, 121, 527
MfeI	CAATTG	2 cut(s)	498, 609
MluCI	AATT	9 cut(s)	32, 139, 157, 251, 437, 498, 586, 592, 609
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	157, 412, 412, 476, 544
MseI	TTAA	2 cut(s)	281, 426
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	2 cut(s)	212, 220
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	293
MunI	CAATTG	2 cut(s)	498, 609
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	53, 326, 605
NdeII	GATC	5 cut(s)	225, 297, 314, 484, 494
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	347, 368
PkrI	GCNGC	4 cut(s)	211, 219, 262, 290
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	533
PvuII	CAGCTG	2 cut(s)	212, 220
RsaI	GTAC	3 cut(s)	116, 275, 339
RsaNI	GTAC	3 cut(s)	115, 274, 338
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	281, 426
SatI	GCNGC	4 cut(s)	210, 218, 261, 289
Sau3AI	GATC	5 cut(s)	225, 297, 314, 484, 494
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	5 cut(s)	58, 65, 214, 222, 322
SfaNI	GCATC	4 cut(s)	34, 158, 196, 559
SfuI	TTCGAA	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	9 cut(s)	32, 139, 157, 251, 437, 498, 586, 592, 609
SsiI	CCGC	2 cut(s)	355, 572
SspMI	CTAG	2 cut(s)	309, 372
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	333
TasI	AATT	9 cut(s)	32, 139, 157, 251, 437, 498, 586, 592, 609
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	347, 368
Tru1I	TTAA	2 cut(s)	281, 426
Tru9I	TTAA	2 cut(s)	281, 426
TscAI	CASTG	2 cut(s)	112, 206
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	4 cut(s)	209, 217, 260, 288
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	442
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	112, 206
XapI	RAATTY	3 cut(s)	139, 157, 586
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	309, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.