Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

61334073 .. 61339674

Gene Structure 5602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015074

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCATGACCTTCTAGAAGACATGGAAAAAGAAATTGTTCGACAAGAGTCTCCTGATGAGGAAGGACAACACAGCAGACTATGGCGATATGAGGATATTCGCGAAGTCTTTGAGGAAAACAAATTACTGGTGGCACTGGATTGTACTTGCGATGATTTAGAAAGAAATGGACACTGGAATGCAGCTGTGCAGTTGGTGATCAAAGCAGCTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCACCTCCATCTGCCTTCGATGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTTGACACTAATGACATTAGTTCCTCTACTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTGTCTGATGCCAGATGGCTTCTTGATGCGGGGAGCAAGGAGTATGGGCATCTGGAATTGTTAAATTATGCTCATGTAAATTTTGTGTACTCATCTCACACTGGACAAGTTTTCCAGGATACTGTTCTAAACTTTATTTATGATGCATACCATGACAAAAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTGTCAAGCCGCCGCGAAGTGTCTGAAGTAAAGAGCAACCGAACTAAGAACAGGCATTTTATCAGACATGAAGATTGTTCAGATATTCTAGACTGGATACAGAGAACACAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

279

Amino Acids

32.49

Weight (kDa)

4.86

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	60 - 198	1.8e-09	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	246
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	2 cut(s)	102, 735
AciI	CCGC	4 cut(s)	328, 545, 730, 733
AcsI	RAATTY	1 cut(s)	595
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	4 cut(s)	145, 248, 312, 605
AjnI	CCWGG	2 cut(s)	264, 630
AluBI	AGCT	2 cut(s)	185, 209
AluI	AGCT	2 cut(s)	185, 209
Alw26I	GTCTC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	182, 206, 233, 261
ApoI	RAATTY	1 cut(s)	595
Asp700I	GAANNNNTTC	1 cut(s)	36
Asp718I	GGTACC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	208, 282
AxyI	CCTNAGG	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	194, 218, 220, 273
BccI	CCATC	3 cut(s)	304, 503, 525
BciT130I	CCWGG	2 cut(s)	266, 632
BciVI	GTATCC	2 cut(s)	628, 810
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	4 cut(s)	14, 282, 345, 809
BfuI	GTATCC	2 cut(s)	628, 810
BisI	GCNGC	6 cut(s)	183, 207, 234, 262, 730, 733
BlsI	GCNGC	6 cut(s)	184, 208, 235, 263, 731, 734
Bme1390I	CCNGG	2 cut(s)	266, 632
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	266, 632
BmsI	GCATC	4 cut(s)	514, 532, 574, 649
BoxI	GACNNNNGTC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	287
Bse1I	ACTGG	5 cut(s)	132, 141, 179, 622, 818
Bse21I	CCTNAGG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	266, 632
BseNI	ACTGG	5 cut(s)	132, 141, 179, 622, 818
BseXI	GCAGC	4 cut(s)	194, 218, 220, 273
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	102, 735
BshNI	GGYRCC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	198, 270, 287, 457, 467
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	4 cut(s)	328, 545, 730, 733
BspFNI	CGCG	2 cut(s)	102, 735
BspLI	GGNNCC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	5 cut(s)	132, 141, 179, 622, 818
BssMI	GATC	5 cut(s)	198, 270, 287, 457, 467
Bst2UI	CCWGG	2 cut(s)	266, 632
Bst4CI	ACNGT	2 cut(s)	315, 640
BstDEI	CTNAG	2 cut(s)	216, 765
BstFNI	CGCG	2 cut(s)	102, 735
BstKTI	GATC	5 cut(s)	201, 273, 290, 460, 470
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	5 cut(s)	198, 270, 287, 457, 467
BstNI	CCWGG	2 cut(s)	266, 632
BstPAI	GACNNNNGTC	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	264, 630
BstUI	CGCG	2 cut(s)	102, 735
BstV1I	GCAGC	4 cut(s)	194, 218, 220, 273
BstV2I	GAAGAC	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	216
BsuI	GTATCC	2 cut(s)	628, 810
BtgZI	GCGATG	2 cut(s)	165, 496
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	4 cut(s)	134, 172, 615, 701
BtuMI	TCGCGA	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	506
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	4 cut(s)	144, 247, 311, 604
CviAII	CATG	5 cut(s)	5, 22, 590, 668, 788
CviJI	RGCY	8 cut(s)	185, 209, 221, 233, 264, 535, 729, 834
CviKI_1	RGCY	8 cut(s)	185, 209, 221, 233, 264, 535, 729, 834
CviQI	GTAC	4 cut(s)	144, 247, 311, 604
DdeI	CTNAG	2 cut(s)	216, 765
DpnI	GATC	5 cut(s)	200, 272, 289, 459, 469
DpnII	GATC	5 cut(s)	198, 270, 287, 457, 467
Eco57I	CTGAAG	1 cut(s)	765
Eco81I	CCTNAGG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	264, 630
EcoT22I	ATGCAT	2 cut(s)	6, 664
FaeI	CATG	5 cut(s)	8, 25, 593, 671, 791
FatI	CATG	5 cut(s)	4, 21, 589, 667, 787
FauI	CCCGC	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	6 cut(s)	183, 207, 234, 262, 730, 733
Fsp4HI	GCNGC	6 cut(s)	183, 207, 234, 262, 730, 733
FspBI	CTAG	4 cut(s)	14, 282, 345, 809
GluI	GCNGC	6 cut(s)	183, 207, 234, 262, 730, 733
GsuI	CTGGAG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	8, 25, 593, 671, 791
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	47, 320, 341, 698
HphI	GGTGA	2 cut(s)	208, 282
Hpy166II	GTNNAC	2 cut(s)	355, 604
Hpy188I	TCNGA	4 cut(s)	523, 745, 785, 802
Hpy188III	TCNNGA	7 cut(s)	14, 53, 101, 501, 539, 569, 809
Hpy8I	GTNNAC	2 cut(s)	355, 604
HpyAV	CCTTC	3 cut(s)	20, 56, 313
HpyCH4III	ACNGT	2 cut(s)	315, 640
HpyCH4V	TGCA	5 cut(s)	4, 182, 190, 662, 706
HpyF3I	CTNAG	2 cut(s)	216, 765
Hsp92II	CATG	5 cut(s)	8, 25, 593, 671, 791
KpnI	GGTACC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	198, 270, 287, 457, 467
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	4 cut(s)	194, 218, 220, 273
LweI	GCATC	4 cut(s)	514, 532, 574, 649
MaeI	CTAG	4 cut(s)	14, 282, 345, 809
MalI	GATC	5 cut(s)	200, 272, 289, 459, 469
MboI	GATC	5 cut(s)	198, 270, 287, 457, 467
MboII	GAAGA	4 cut(s)	29, 500, 724, 803
MfeI	CAATTG	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	52, 85, 106, 303, 385, 385, 449
Mph1103I	ATGCAT	2 cut(s)	6, 664
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	3 cut(s)	254, 399, 578
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	185, 209
MspR9I	CCNGG	2 cut(s)	266, 632
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	266, 632
MvnI	CGCG	2 cut(s)	102, 735
NdeII	GATC	5 cut(s)	198, 270, 287, 457, 467
NlaIII	CATG	5 cut(s)	8, 25, 593, 671, 791
NlaIV	GGNNCC	1 cut(s)	248
NruI	TCGCGA	1 cut(s)	102
NsiI	ATGCAT	2 cut(s)	6, 664
PctI	GAATGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	320, 341, 698
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	6 cut(s)	184, 208, 235, 263, 731, 734
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PshAI	GACNNNNGTC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	264, 630
PspGI	CCWGG	2 cut(s)	264, 630
PspN4I	GGNNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	506
PvuII	CAGCTG	2 cut(s)	185, 209
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	4 cut(s)	145, 248, 312, 605
RsaNI	GTAC	4 cut(s)	144, 247, 311, 604
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	254, 399, 578
SatI	GCNGC	6 cut(s)	183, 207, 234, 262, 730, 733
Sau3AI	GATC	5 cut(s)	198, 270, 287, 457, 467
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	266, 632
SetI	ASST	4 cut(s)	12, 187, 211, 295
SfaNI	GCATC	4 cut(s)	514, 532, 574, 649
SmiMI	CAYNNNNRTG	1 cut(s)	177
SsiI	CCGC	4 cut(s)	328, 545, 730, 733
SspMI	CTAG	4 cut(s)	14, 282, 345, 809
StyD4I	CCNGG	2 cut(s)	264, 630
TaaI	ACNGT	2 cut(s)	315, 640
TaqI	TCGA	2 cut(s)	40, 306
TatI	WGTACW	2 cut(s)	143, 603
TauI	GCSGC	2 cut(s)	732, 735
TfiI	GAWTC	3 cut(s)	320, 341, 698
Tru1I	TTAA	3 cut(s)	254, 399, 578
Tru9I	TTAA	3 cut(s)	254, 399, 578
TscAI	CASTG	4 cut(s)	141, 179, 622, 708
TseI	GCWGC	4 cut(s)	182, 206, 233, 261
TspDTI	ATGAA	3 cut(s)	415, 725, 804
TspRI	CASTG	4 cut(s)	141, 179, 622, 708
XapI	RAATTY	1 cut(s)	595
XbaI	TCTAGA	2 cut(s)	13, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	4 cut(s)	14, 282, 345, 809
Zsp2I	ATGCAT	2 cut(s)	6, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.