Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

33540627 .. 33543902

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTATTATTCTTCAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTCTGGCACTGGATTGTACTTGCGATGGTAGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTCTGAGTTGGCAGATTTAGAAATAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCTTGGAGATCATCAAGTCTAGTGGATCACCTCCATCTGCCTTCGAAGTACCGTATGATTCTTTCCTCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAATTTAAATCAAAGGAATTGGACTATGACTTCTTTTGCTTTTTCCTCTCAAAGCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTGTCTGAGGCCAGATGGCTTCTTGATGCTGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGGAGCAAGGAGGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAAAAGTGGAAATTGGGTTGTACCTGAATCACTGCAAATGAAGAAAGAATTGTCAAGCCGCCGAGAAGTGTCTGAACTAAAGAGCAACCGAACTAAGAACAGGCATTTTATCAGACATGAAGATTGTTCAGATATTCTAGACTGGATACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

278

Amino Acids

31.46

Weight (kDa)

4.79

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 215	2.1e-17	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	742
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	2 cut(s)	443, 607
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	4 cut(s)	115, 296, 360, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	3 cut(s)	56, 233, 312
AluI	AGCT	3 cut(s)	56, 233, 312
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	230, 281, 309
ApoI	RAATTY	2 cut(s)	443, 607
Asp718I	GGTACC	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	256, 269, 330
AsuII	TTCGAA	1 cut(s)	354
AxyI	CCTNAGG	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	242, 268, 321
BccI	CCATC	4 cut(s)	116, 352, 551, 573
BciVI	GTATCC	2 cut(s)	640, 822
BclI	TGATCA	1 cut(s)	246
BfaI	CTAG	3 cut(s)	330, 393, 821
BfuAI	ACCTGC	1 cut(s)	245
BfuI	GTATCC	2 cut(s)	640, 822
BisI	GCNGC	4 cut(s)	231, 282, 310, 742
BlsI	GCNGC	4 cut(s)	232, 283, 311, 743
BmiI	GGNNCC	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	5 cut(s)	34, 185, 217, 580, 661
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	354
Bse1I	ACTGG	3 cut(s)	111, 227, 830
Bse21I	CCTNAGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	183, 561
BseNI	ACTGG	3 cut(s)	111, 227, 830
BseXI	GCAGC	3 cut(s)	242, 268, 321
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	575
Bsp119I	TTCGAA	1 cut(s)	354
Bsp143I	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
BspACI	CCGC	1 cut(s)	742
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	2 cut(s)	184, 562
BspLI	GGNNCC	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	111, 227, 830
BssMI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
Bst4CI	ACNGT	3 cut(s)	363, 652, 834
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	4 cut(s)	192, 264, 570, 777
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	6 cut(s)	174, 249, 321, 338, 508, 518
BstMBI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 626
BstPI	GGTNACC	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	242, 268, 321
BstV2I	GAAGAC	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	2 cut(s)	640, 822
BsuRI	GGCC	1 cut(s)	575
BtgZI	GCGATG	2 cut(s)	135, 544
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	713
BtsIMutI	CAGTG	3 cut(s)	104, 220, 713
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	554
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	114, 295, 359, 704
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	2 cut(s)	680, 800
CviJI	RGCY	9 cut(s)	56, 161, 233, 269, 281, 312, 575, 583, 741
CviKI_1	RGCY	9 cut(s)	56, 161, 233, 269, 281, 312, 575, 583, 741
CviQI	GTAC	4 cut(s)	114, 295, 359, 704
DdeI	CTNAG	4 cut(s)	192, 264, 570, 777
DpnI	GATC	6 cut(s)	173, 248, 320, 337, 507, 517
DpnII	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
DraI	TTTAAA	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	676
FaeI	CATG	2 cut(s)	683, 803
FatI	CATG	2 cut(s)	679, 799
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	231, 282, 310, 742
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	231, 282, 310, 742
FspBI	CTAG	3 cut(s)	330, 393, 821
GluI	GCNGC	4 cut(s)	231, 282, 310, 742
HaeIII	GGCC	1 cut(s)	575
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	683, 803
HinfI	GANTC	3 cut(s)	368, 389, 710
HphI	GGTGA	3 cut(s)	256, 269, 330
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	7 cut(s)	16, 181, 193, 571, 757, 797, 814
Hpy188III	TCNNGA	4 cut(s)	71, 549, 587, 821
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	3 cut(s)	363, 652, 834
HpyCH4V	TGCA	5 cut(s)	47, 230, 238, 674, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 626
HpyF3I	CTNAG	4 cut(s)	192, 264, 570, 777
Hsp92II	CATG	2 cut(s)	683, 803
KpnI	GGTACC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	3 cut(s)	242, 268, 321
LweI	GCATC	5 cut(s)	34, 185, 217, 580, 661
MaeI	CTAG	3 cut(s)	330, 393, 821
MaeIII	GTNAC	2 cut(s)	94, 257
MalI	GATC	6 cut(s)	173, 248, 320, 337, 507, 517
MboI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
MboII	GAAGA	5 cut(s)	3, 180, 548, 736, 815
MfeI	CAATTG	2 cut(s)	519, 630
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	172, 351, 386, 433, 433, 497, 565, 637
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	3 cut(s)	131, 302, 447
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	233
MunI	CAATTG	2 cut(s)	519, 630
MwoI	GCNNNNNNNGC	2 cut(s)	53, 626
NdeII	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
NlaIII	CATG	2 cut(s)	683, 803
NlaIV	GGNNCC	1 cut(s)	296
NmeAIII	GCCGAG	1 cut(s)	770
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	368, 389, 710
PkrI	GCNGC	4 cut(s)	232, 283, 311, 743
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	4 cut(s)	115, 296, 360, 705
RsaNI	GTAC	4 cut(s)	114, 295, 359, 704
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	131, 302, 447
SatI	GCNGC	4 cut(s)	231, 282, 310, 742
Sau3AI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
SetI	ASST	8 cut(s)	58, 65, 131, 235, 259, 314, 343, 709
SfaNI	GCATC	5 cut(s)	34, 185, 217, 580, 661
SfuI	TTCGAA	1 cut(s)	354
SmiI	ATTTAAAT	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	225
SsiI	CCGC	1 cut(s)	742
SspMI	CTAG	3 cut(s)	330, 393, 821
SwaI	ATTTAAAT	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	363, 652, 834
TaqI	TCGA	1 cut(s)	354
TatI	WGTACW	1 cut(s)	113
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	3 cut(s)	368, 389, 710
Tru1I	TTAA	3 cut(s)	131, 302, 447
Tru9I	TTAA	3 cut(s)	131, 302, 447
TscAI	CASTG	3 cut(s)	111, 227, 720
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	230, 281, 309
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	737, 816
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	3 cut(s)	111, 227, 720
XapI	RAATTY	2 cut(s)	443, 607
XbaI	TCTAGA	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	97, 686
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	3 cut(s)	330, 393, 821
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.