Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

65411836 .. 65417734

Gene Structure 5899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG469300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGTTATCATAAGGATTTTAGAGTTGAAAAAGATAGGCATTGGATGGAAAGGAAGGATCGTTGTGGCTCTTTCATTTTGGATATCTGCCTAGACTACTCCATTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGTCTAGTAGATCACCTCCATATGCCTTCGAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

91

Amino Acids

10.64

Weight (kDa)

8.76

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	26 - 77	2.4e-11	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	194, 236
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	230
BccI	CCATC	1 cut(s)	40
BfaI	CTAG	3 cut(s)	92, 206, 269
BmsI	GCATC	1 cut(s)	112
Bpu14I	TTCGAA	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	181, 190
BseGI	GGATG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	181, 190
Bsp119I	TTCGAA	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	58, 211
BspACI	CCGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	181, 190
BssMI	GATC	2 cut(s)	58, 211
Bst4CI	ACNGT	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	61, 214
BstMBI	GATC	2 cut(s)	58, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	193, 235
CviJI	RGCY	2 cut(s)	69, 134
CviKI_1	RGCY	2 cut(s)	69, 134
CviQI	GTAC	2 cut(s)	193, 235
DpnI	GATC	2 cut(s)	60, 213
DpnII	GATC	2 cut(s)	58, 211
Eco32I	GATATC	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	85
FaiI	YATR	6 cut(s)	12, 117, 170, 222, 224, 242
FauNDI	CATATG	1 cut(s)	222
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	3 cut(s)	92, 206, 269
HinfI	GANTC	2 cut(s)	244, 265
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	49, 237
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	58, 211
LpnPI	CCDG	2 cut(s)	162, 171
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	92, 206, 269
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	60, 213
MboI	GATC	2 cut(s)	58, 211
MluCI	AATT	1 cut(s)	110
MnlI	CCTC	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	2 cut(s)	58, 211
NspV	TTCGAA	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	244, 265
RsaI	GTAC	2 cut(s)	194, 236
RsaNI	GTAC	2 cut(s)	193, 235
Sau3AI	GATC	2 cut(s)	58, 211
SetI	ASST	3 cut(s)	136, 143, 219
SfaNI	GCATC	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	230
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	3 cut(s)	92, 206, 269
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	244, 265
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	190
XspI	CTAG	3 cut(s)	92, 206, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.