Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

68961522 .. 68966235

Gene Structure 4714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTGGATCAGCAAAGCCTTCTCCAGGAAGTACCACATCATCTGGTTGACATATTGCACCCATCTGAAGACTACTCGGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGACAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTCTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTGGATCACCTCCATCTGGCTTTGAAGTACTGTATGATTCTTTCCGCAAAGAATGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

147

Amino Acids

16.49

Weight (kDa)

5.31

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	8 - 135	8.5e-30	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	15, 394
AcuI	CTGAAG	2 cut(s)	87, 252
AfaI	GTAC	4 cut(s)	33, 170, 347, 411
AfiI	CCNNNNNNNGG	2 cut(s)	25, 398
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	24, 363
AluBI	AGCT	2 cut(s)	110, 284
AluI	AGCT	2 cut(s)	110, 284
AlwI	GGATC	2 cut(s)	15, 394
ApeKI	GCWGC	3 cut(s)	281, 332, 360
Asp718I	GGTACC	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	307, 320, 381
AxyI	CCTNAGG	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	2 cut(s)	75, 231
BbvI	GCAGC	3 cut(s)	293, 319, 372
BccI	CCATC	3 cut(s)	70, 171, 403
BciT130I	CCWGG	2 cut(s)	26, 365
BclI	TGATCA	1 cut(s)	297
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	282, 333, 361
BlsI	GCNGC	3 cut(s)	283, 334, 362
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	26, 365
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	2 cut(s)	26, 365
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	3 cut(s)	88, 236, 268
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	75, 231
BpmI	CTGGAG	2 cut(s)	8, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 398
Bse1I	ACTGG	3 cut(s)	157, 166, 278
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	26, 365
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	25, 398
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	157, 166, 278
BseXI	GCAGC	3 cut(s)	293, 319, 372
BsgI	GTGCAG	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	25, 398
Bsp143I	GATC	5 cut(s)	7, 222, 297, 369, 386
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	15, 394
BspT107I	GGYRCC	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	157, 166, 278
BssMI	GATC	5 cut(s)	7, 222, 297, 369, 386
Bst2UI	CCWGG	2 cut(s)	26, 365
Bst4CI	ACNGT	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	243, 315
BstEII	GGTNACC	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	10, 225, 300, 372, 389
BstMBI	GATC	5 cut(s)	7, 222, 297, 369, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	2 cut(s)	26, 365
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	24, 363
BstV1I	GCAGC	3 cut(s)	293, 319, 372
BstV2I	GAAGAC	2 cut(s)	75, 231
Bsu36I	CCTNAGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	159, 271
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	108
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	4 cut(s)	32, 169, 346, 410
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviJI	RGCY	8 cut(s)	18, 110, 212, 284, 320, 332, 363, 402
CviKI_1	RGCY	8 cut(s)	18, 110, 212, 284, 320, 332, 363, 402
CviQI	GTAC	4 cut(s)	32, 169, 346, 410
DdeI	CTNAG	2 cut(s)	243, 315
DpnI	GATC	5 cut(s)	9, 224, 299, 371, 388
DpnII	GATC	5 cut(s)	7, 222, 297, 369, 386
Eco57I	CTGAAG	2 cut(s)	87, 252
Eco81I	CCTNAGG	1 cut(s)	315
Eco91I	GGTNACC	1 cut(s)	308
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	24, 363
FaiI	YATR	6 cut(s)	53, 93, 146, 187, 189, 417
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	282, 333, 361
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	282, 333, 361
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	282, 333, 361
GsuI	CTGGAG	2 cut(s)	8, 386
HgaI	GACGC	1 cut(s)	366
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	419
HphI	GGTGA	3 cut(s)	307, 320, 381
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	67, 232, 244
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	58, 101, 281, 289
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	243, 315
KpnI	GGTACC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	7, 222, 297, 369, 386
Lsp1109I	GCAGC	3 cut(s)	293, 319, 372
LweI	GCATC	3 cut(s)	88, 236, 268
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	148, 308
MalI	GATC	5 cut(s)	9, 224, 299, 371, 388
MboI	GATC	5 cut(s)	7, 222, 297, 369, 386
MboII	GAAGA	2 cut(s)	80, 231
MluCI	AATT	2 cut(s)	86, 323
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	223, 402
MseI	TTAA	2 cut(s)	182, 353
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	26, 365
MvaI	CCWGG	2 cut(s)	26, 365
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	5 cut(s)	7, 222, 297, 369, 386
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	308
PaqCI	CACCTGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	283, 334, 362
Psp6I	CCWGG	2 cut(s)	24, 363
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	2 cut(s)	24, 363
PspN4I	GGNNCC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	4 cut(s)	33, 170, 347, 411
RsaNI	GTAC	4 cut(s)	32, 169, 346, 410
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	182, 353
SatI	GCNGC	3 cut(s)	282, 333, 361
Sau3AI	GATC	5 cut(s)	7, 222, 297, 369, 386
ScaI	AGTACT	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	26, 365
SetI	ASST	5 cut(s)	112, 119, 286, 310, 394
SfaNI	GCATC	3 cut(s)	88, 236, 268
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	86, 323
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	24, 363
TaaI	ACNGT	1 cut(s)	414
TasI	AATT	2 cut(s)	86, 323
TatI	WGTACW	2 cut(s)	168, 409
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	182, 353
Tru9I	TTAA	2 cut(s)	182, 353
TscAI	CASTG	2 cut(s)	166, 278
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	3 cut(s)	281, 332, 360
Tsp45I	GTSAC	1 cut(s)	308
TspRI	CASTG	2 cut(s)	166, 278
XagI	CCTNNNNNAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.