Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00418

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

56408 .. 69422

Gene Structure 13015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G010090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

CATCTCTCCTCAAAACATCATCTCCTCTCGCACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTTTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTAGAGATCATCAAGTCTAGTAGATCACCTCCATCTGCCTTCGAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATACGGTGTCAGGAACTGATGGTATCTTGTCTAAGGCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGTGTGTACGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGTGGAGGTAGTCTCCAGCTAAGTTGGGAGACGAACCATTATATACTTCTCATGTCTCATTTACTCTCTCTCTCTCTCTCTCTAAAGCTAACTAGAGCCTTCGATTCTCATGTGTGTACAAGAGACAAGCATAACTTAGACGTGGCATTGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

292

Amino Acids

32.84

Weight (kDa)

5.86

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	7 - 215	1.1e-24	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	2 cut(s)	388, 605
AcsI	RAATTY	2 cut(s)	619, 704
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	5 cut(s)	131, 308, 372, 652, 838
AgsI	TTSAA	2 cut(s)	710, 871
AjiI	CACGTC	1 cut(s)	862
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
AluBI	AGCT	4 cut(s)	71, 245, 739, 808
AluI	AGCT	4 cut(s)	71, 245, 739, 808
Alw26I	GTCTC	4 cut(s)	737, 743, 780, 837
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	3 cut(s)	242, 293, 321
ApoI	RAATTY	2 cut(s)	619, 704
Asp718I	GGTACC	1 cut(s)	306
AsuHPI	GGTGA	4 cut(s)	268, 281, 342, 666
AsuII	TTCGAA	1 cut(s)	366
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	254, 280, 333
BccI	CCATC	4 cut(s)	132, 364, 563, 585
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	737, 743, 780, 837
BfaI	CTAG	5 cut(s)	326, 342, 405, 720, 813
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	3 cut(s)	243, 294, 322
BlsI	GCNGC	3 cut(s)	244, 295, 323
BmgBI	CACGTC	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	5 cut(s)	49, 197, 229, 592, 725
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	717, 749
BpmI	CTGGAG	1 cut(s)	719
Bpu14I	TTCGAA	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	3 cut(s)	118, 127, 239
Bse21I	CCTNAGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	118, 127, 239
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	254, 280, 333
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	306
BsmAI	GTCTC	4 cut(s)	737, 743, 780, 837
BsmBI	CGTCTC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	587
Bsp119I	TTCGAA	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	836
Bsp143I	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
BspACI	CCGC	2 cut(s)	388, 605
BspANI	GGCC	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	836
BsrI	ACTGG	3 cut(s)	118, 127, 239
BssMI	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
Bst4CI	ACNGT	2 cut(s)	375, 556
BstAUI	TGTACA	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	4 cut(s)	276, 582, 740, 856
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	6 cut(s)	186, 261, 333, 350, 520, 530
BstMAI	GTCTC	4 cut(s)	737, 743, 780, 837
BstMBI	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 638
BstPI	GGTNACC	1 cut(s)	269
BstV1I	GCAGC	3 cut(s)	254, 280, 333
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	587
BtgZI	GCGATG	2 cut(s)	151, 556
BtrI	CACGTC	1 cut(s)	862
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	120, 232
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	566
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	5 cut(s)	130, 307, 371, 651, 837
CviAII	CATG	2 cut(s)	772, 830
CviQI	GTAC	5 cut(s)	130, 307, 371, 651, 837
DdeI	CTNAG	4 cut(s)	276, 582, 740, 856
DpnI	GATC	6 cut(s)	185, 260, 332, 349, 519, 529
DpnII	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
Eco57I	CTGAAG	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	276
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	743
FaeI	CATG	2 cut(s)	775, 833
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FatI	CATG	2 cut(s)	771, 829
FauI	CCCGC	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	243, 294, 322
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	243, 294, 322
FspBI	CTAG	5 cut(s)	326, 342, 405, 720, 813
GluI	GCNGC	3 cut(s)	243, 294, 322
GsuI	CTGGAG	1 cut(s)	719
HaeIII	GGCC	1 cut(s)	587
HgaI	GACGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	775, 833
HinfI	GANTC	3 cut(s)	380, 401, 824
HphI	GGTGA	4 cut(s)	268, 281, 342, 666
Hpy166II	GTNNAC	3 cut(s)	415, 651, 837
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	86, 561, 599
Hpy8I	GTNNAC	3 cut(s)	415, 651, 837
HpyAV	CCTTC	2 cut(s)	373, 829
HpyCH4III	ACNGT	2 cut(s)	375, 556
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	3 cut(s)	62, 242, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 638
HpyF3I	CTNAG	4 cut(s)	276, 582, 740, 856
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	2 cut(s)	775, 833
KpnI	GGTACC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
LmnI	GCTCC	1 cut(s)	655
LpnPI	CCDG	9 cut(s)	99, 108, 171, 220, 252, 546, 601, 649, 749
Lsp1109I	GCAGC	3 cut(s)	254, 280, 333
LweI	GCATC	5 cut(s)	49, 197, 229, 592, 725
MaeI	CTAG	5 cut(s)	326, 342, 405, 720, 813
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	2 cut(s)	109, 269
MalI	GATC	6 cut(s)	185, 260, 332, 349, 519, 529
MboI	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
MboII	GAAGA	2 cut(s)	560, 663
MfeI	CAATTG	2 cut(s)	531, 642
MluCI	AATT	9 cut(s)	47, 284, 470, 531, 619, 625, 642, 704, 871
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	9 cut(s)	19, 35, 184, 363, 445, 445, 509, 656, 719
MseI	TTAA	4 cut(s)	143, 314, 459, 877
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	245
MunI	CAATTG	2 cut(s)	531, 642
MwoI	GCNNNNNNNGC	2 cut(s)	68, 638
NdeII	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
NlaIII	CATG	2 cut(s)	775, 833
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	366
PaqCI	CACCTGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	380, 401, 824
PkrI	GCNGC	3 cut(s)	244, 295, 323
PspEI	GGTNACC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	566
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	131, 308, 372, 652, 838
RsaNI	GTAC	5 cut(s)	130, 307, 371, 651, 837
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	143, 314, 459, 877
SatI	GCNGC	3 cut(s)	243, 294, 322
Sau3AI	GATC	6 cut(s)	183, 258, 330, 347, 517, 527
SfaNI	GCATC	5 cut(s)	49, 197, 229, 592, 725
SfuI	TTCGAA	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	9 cut(s)	47, 284, 470, 531, 619, 625, 642, 704, 871
SsiI	CCGC	2 cut(s)	388, 605
SspMI	CTAG	5 cut(s)	326, 342, 405, 720, 813
TaaI	ACNGT	2 cut(s)	375, 556
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	366, 822
TasI	AATT	9 cut(s)	47, 284, 470, 531, 619, 625, 642, 704, 871
TatI	WGTACW	2 cut(s)	129, 836
TfiI	GAWTC	3 cut(s)	380, 401, 824
Tru1I	TTAA	4 cut(s)	143, 314, 459, 877
Tru9I	TTAA	4 cut(s)	143, 314, 459, 877
TscAI	CASTG	2 cut(s)	127, 239
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	242, 293, 321
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	2 cut(s)	28, 668
TspRI	CASTG	2 cut(s)	127, 239
XapI	RAATTY	2 cut(s)	619, 704
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	5 cut(s)	326, 342, 405, 720, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.