Rw4G018030

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
40222496 .. 40223169
674 bp
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UTR
Exon/CDS
Intron
Rw4G018030.1

Sequence Viewer

Length: 360 bp
ATGTGTCCTTTTTCGTGTTTACATGTTTCTTACTCATTACATTCAAATTTTAAAACCCAGAATTTGTTAATTCTCTGCATAAATTTTGCAAAACGGCAATTGACATGGTTTCATAACGAGCATATCTATCACTGGCTTGACGCTTCCAAACCCTTGGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAACAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTGTCAAGCCGCCGAGAAGTGTTTGAACTAAAGAGCAACCGAACTAAGAACAGGCATTTTATCAGACATGAAGATTGTTCATATATTCTAGACTGGATACAGAGAACACAAGGCTGA

Protein Analysis

119

Amino Acids

14.29

Weight (kDa)

8.32

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AcsI RAATTY 3 cut(s) 46, 61, 82
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 45, 269
ApoI RAATTY 3 cut(s) 46, 61, 82
BceAI ACGGC 1 cut(s) 110
BciVI GTATCC 2 cut(s) 151, 333
BfaI CTAG 1 cut(s) 332
BfuI GTATCC 2 cut(s) 151, 333
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmsI GCATC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 137, 341
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 137, 341
BspACI CCGC 1 cut(s) 253
BsrI ACTGG 2 cut(s) 137, 341
BssECI CCNNGG 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 163, 200
BstDEI CTNAG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuI GTATCC 2 cut(s) 151, 333
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 3 cut(s) 130, 205, 224
CseI GACGC 1 cut(s) 149
CviAII CATG 4 cut(s) 23, 105, 191, 311
CviJI RGCY 3 cut(s) 136, 252, 357
CviKI_1 RGCY 3 cut(s) 136, 252, 357
DdeI CTNAG 1 cut(s) 288
DraI TTTAAA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 26, 108, 194, 314
FatI CATG 4 cut(s) 22, 104, 190, 310
Fnu4HI GCNGC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 253
HgaI GACGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 26, 108, 194, 314
HinfI GANTC 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 163, 200
HpyCH4V TGCA 4 cut(s) 78, 89, 185, 229
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 4 cut(s) 26, 108, 194, 314
LpnPI CCDG 5 cut(s) 71, 118, 231, 280, 322
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 332
MboII GAAGA 2 cut(s) 247, 326
MfeI CAATTG 1 cut(s) 98
MluCI AATT 7 cut(s) 46, 61, 69, 82, 98, 205, 242
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 2 cut(s) 51, 68
MunI CAATTG 1 cut(s) 98
NlaIII CATG 4 cut(s) 26, 108, 194, 314
NmeAIII GCCGAG 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 26
PciI ACATGT 1 cut(s) 22
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 254
PscI ACATGT 1 cut(s) 22
SaqAI TTAA 2 cut(s) 51, 68
SatI GCNGC 1 cut(s) 253
SfaNI GCATC 1 cut(s) 172
Sse9I AATT 7 cut(s) 46, 61, 69, 82, 98, 205, 242
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 163, 200
TasI AATT 7 cut(s) 46, 61, 69, 82, 98, 205, 242
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 51, 68
Tru9I TTAA 2 cut(s) 51, 68
TscAI CASTG 3 cut(s) 137, 205, 231
TspDTI ATGAA 4 cut(s) 101, 248, 312, 327
TspRI CASTG 3 cut(s) 137, 205, 231
XapI RAATTY 3 cut(s) 46, 61, 82
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.