RchiOBHm_Chr6g0273141

Belongs to the IPP transferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
33773893 .. 33775580
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24504

Sequence Viewer

Length: 531 bp
ATGTCTAGTGGATCACCTCCATCTGCCTTCGAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTAATGTTATGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCATACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGAATTTGTTAATTCTCTGCATAAATTTTGCAAAACGGCAATTGACATGGTTTCGTAACGAGCATATCTATCACTGGCTTGACGCTTCCAAACCCTTGGATATAGTTCTAAACTTTATTTGTGATGCATACCATGACAAAAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTGTCAAACCGCCGAGAAGTGTCTGAACTAAAGAGCAACCGAACTAAGAACAGGCATTTTATCAGACATGAAGATTGTTCAGATATTCTAGACTGGATACATGCAGAGAACACAAGGCTGAAACAATGA

Protein Analysis

176

Amino Acids

20.9

Weight (kDa)

5.52

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 78
AciI CCGC 2 cut(s) 52, 412
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 2 cut(s) 220, 241
AfaI GTAC 1 cut(s) 36
AlwI GGATC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 220, 241
AsuHPI GGTGA 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 30
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 269
BciVI GTATCC 1 cut(s) 492
BfaI CTAG 3 cut(s) 6, 69, 491
BfuI GTATCC 1 cut(s) 492
BmsI GCATC 1 cut(s) 331
Bpu14I TTCGAA 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 296, 500
BseDI CCNNGG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 296, 500
Bsp119I TTCGAA 1 cut(s) 30
Bsp143I GATC 3 cut(s) 11, 181, 191
BspACI CCGC 2 cut(s) 52, 412
BspPI GGATC 1 cut(s) 19
BspT104I TTCGAA 1 cut(s) 30
BsrI ACTGG 2 cut(s) 296, 500
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 11, 181, 191
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 447
BstKTI GATC 3 cut(s) 14, 184, 194
BstMBI GATC 3 cut(s) 11, 181, 191
BstNSI RCATGY 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuI GTATCC 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 289, 383
CseI GACGC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 264, 350, 470, 503
CviJI RGCY 2 cut(s) 295, 520
CviKI_1 RGCY 2 cut(s) 295, 520
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 447
DpnI GATC 3 cut(s) 13, 183, 193
DpnII GATC 3 cut(s) 11, 181, 191
Eco130I CCWWGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 4 cut(s) 267, 353, 473, 506
FatI CATG 4 cut(s) 263, 349, 469, 502
FblI GTMKAC 1 cut(s) 78
FspBI CTAG 3 cut(s) 6, 69, 491
HgaI GACGC 1 cut(s) 308
Hin1II CATG 4 cut(s) 267, 353, 473, 506
HinfI GANTC 3 cut(s) 44, 65, 380
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 427, 467, 484
Hpy188III TCNNGA 1 cut(s) 491
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4V TGCA 5 cut(s) 237, 248, 344, 388, 506
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 4 cut(s) 267, 353, 473, 506
Kzo9I GATC 3 cut(s) 11, 181, 191
LpnPI CCDG 4 cut(s) 277, 390, 439, 481
LweI GCATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 6, 69, 491
MaeIII GTNAC 1 cut(s) 272
MalI GATC 3 cut(s) 13, 183, 193
MboI GATC 3 cut(s) 11, 181, 191
MboII GAAGA 3 cut(s) 224, 406, 485
MfeI CAATTG 2 cut(s) 195, 257
MluCI AATT 8 cut(s) 134, 195, 220, 228, 241, 257, 364, 401
MnlI CCTC 4 cut(s) 27, 109, 109, 173
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 2 cut(s) 123, 227
MunI CAATTG 2 cut(s) 195, 257
NdeII GATC 3 cut(s) 11, 181, 191
NlaIII CATG 4 cut(s) 267, 353, 473, 506
NmeAIII GCCGAG 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 346
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 1 cut(s) 30
PfeI GAWTC 3 cut(s) 44, 65, 380
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 123, 227
Sau3AI GATC 3 cut(s) 11, 181, 191
SetI ASST 1 cut(s) 19
SfaNI GCATC 1 cut(s) 331
SfuI TTCGAA 1 cut(s) 30
Sse9I AATT 8 cut(s) 134, 195, 220, 228, 241, 257, 364, 401
SsiI CCGC 2 cut(s) 52, 412
SspMI CTAG 3 cut(s) 6, 69, 491
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 30
TasI AATT 8 cut(s) 134, 195, 220, 228, 241, 257, 364, 401
TfiI GAWTC 3 cut(s) 44, 65, 380
Tru1I TTAA 2 cut(s) 123, 227
Tru9I TTAA 2 cut(s) 123, 227
TscAI CASTG 2 cut(s) 296, 390
TspDTI ATGAA 4 cut(s) 139, 233, 407, 486
TspRI CASTG 2 cut(s) 296, 390
XapI RAATTY 2 cut(s) 220, 241
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 3 cut(s) 6, 69, 491
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.