Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

35852718 .. 35859601

Gene Structure 6884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG307000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTATTATTCCTCAGACTACTCCGTTGGACAATTTTATGAGGATGCAAGGCAAACTACAAGATGTATTCTTGATAATGGTCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCCTAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTCTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTGGATCACCTCCATCTGCCTTCAAAGTACCGTATAATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTGTCTGAGGCCAGATGGCTTCTTGATGCGGGTCTTCTTCCAAATTCCAATTCAGCAACCAGAGCAATTGGTTATAGACAAGCTATGGAGTATTTATTATTGTGTAGGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTTTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGAAATTTTGCAAAACGGCAATTGACATGGTTTCGTAATGAGCATATCTATCACTGGCTTGACGCTTCCAAACCCTTGGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAAAAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTATTAAGCCGCCGAGAAGAGTCTGAACTAAAGAGCTATCGAACTAAGAACAGGCATTTTATCAGACGTGAAGATTGTTCAGATATTCTAAACTGGATACAGAAAACACAAGATTATCTGAAGCAAACAAAAATCTTCTGTGAATCCCTCCAACACCACCTGATGAGGCTGCACATTCAATATCGGGAATTGTCCCCAGAGAAGTCATCGTACCGATTCTTAATAGAGAAAATGACCCCATGCTCACAAATTTTCCAGCGTTTTCGTAGACAGCCTCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

394

Amino Acids

46.09

Weight (kDa)

7.98

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 259	4.5e-43	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	399, 1168
AciI	CCGC	3 cut(s)	373, 590, 910
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	4 cut(s)	604, 719, 739, 1149
AcuI	CTGAAG	2 cut(s)	198, 1040
AfaI	GTAC	5 cut(s)	116, 293, 357, 1112, 1181
AgsI	TTSAA	3 cut(s)	352, 725, 1079
AjiI	CACGTC	1 cut(s)	968
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	3 cut(s)	230, 644, 936
AluI	AGCT	3 cut(s)	230, 644, 936
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	4 cut(s)	227, 278, 306, 1069
ApoI	RAATTY	4 cut(s)	604, 719, 739, 1149
Asp718I	GGTACC	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	253, 266, 327, 681
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	291
BarI	GAAGNNNNNNTAC	2 cut(s)	1094, 1126
BbsI	GAAGAC	2 cut(s)	177, 587
BbvI	GCAGC	4 cut(s)	239, 265, 318, 1056
BccI	CCATC	4 cut(s)	117, 349, 548, 570
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	2 cut(s)	808, 990
BclI	TGATCA	1 cut(s)	243
BfaI	CTAG	3 cut(s)	327, 390, 735
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	2 cut(s)	808, 990
BisI	GCNGC	5 cut(s)	228, 279, 307, 910, 1070
BlsI	GCNGC	5 cut(s)	229, 280, 308, 911, 1071
BmcAI	AGTACT	1 cut(s)	1181
Bme1390I	CCNGG	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	968
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	6 cut(s)	34, 182, 214, 577, 740, 829
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	177, 587
BpmI	CTGGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	810
Bse1I	ACTGG	5 cut(s)	103, 112, 224, 794, 998
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	49, 229
BseMII	CTCAG	3 cut(s)	27, 180, 558
BseNI	ACTGG	5 cut(s)	103, 112, 224, 794, 998
BseXI	GCAGC	4 cut(s)	239, 265, 318, 1056
BsgI	GTGCAG	2 cut(s)	254, 1055
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	1078
BsmFI	GGGAC	1 cut(s)	1078
BsnI	GGCC	1 cut(s)	572
Bsp143I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BspACI	CCGC	3 cut(s)	373, 590, 910
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	3 cut(s)	26, 181, 559
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	291
BsrI	ACTGG	5 cut(s)	103, 112, 224, 794, 998
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	360, 820
Bst6I	CTCTTC	1 cut(s)	912
BstDEI	CTNAG	6 cut(s)	13, 189, 261, 567, 945, 1176
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	49, 229
BstKTI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
BstMBI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	239, 265, 318, 1056
BstV2I	GAAGAC	2 cut(s)	177, 587
BstXI	CCANNNNNNTGG	1 cut(s)	811
Bsu36I	CCTNAGG	1 cut(s)	261
BsuI	GTATCC	2 cut(s)	808, 990
BsuRI	GGCC	1 cut(s)	572
BtgZI	GCGATG	2 cut(s)	136, 541
BtrI	CACGTC	1 cut(s)	968
BtsCI	GGATG	2 cut(s)	49, 229
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	4 cut(s)	105, 217, 787, 881
BveI	ACCTGC	1 cut(s)	242
CaiI	CAGNNNCTG	1 cut(s)	551
CseI	GACGC	2 cut(s)	312, 806
Csp6I	GTAC	5 cut(s)	115, 292, 356, 1111, 1180
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	3 cut(s)	762, 848, 1140
CviQI	GTAC	5 cut(s)	115, 292, 356, 1111, 1180
DdeI	CTNAG	6 cut(s)	13, 189, 261, 567, 945, 1176
DpnI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
DpnII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Eco130I	CCWWGG	1 cut(s)	810
Eco57I	CTGAAG	2 cut(s)	198, 1040
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	3 cut(s)	765, 851, 1143
FaqI	GGGAC	1 cut(s)	1078
FatI	CATG	3 cut(s)	761, 847, 1139
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	2 cut(s)	399, 1168
Fnu4HI	GCNGC	5 cut(s)	228, 279, 307, 910, 1070
FokI	GGATG	2 cut(s)	56, 236
Fsp4HI	GCNGC	5 cut(s)	228, 279, 307, 910, 1070
FspBI	CTAG	3 cut(s)	327, 390, 735
GluI	GCNGC	5 cut(s)	228, 279, 307, 910, 1070
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	572
HgaI	GACGC	2 cut(s)	312, 806
Hin1II	CATG	3 cut(s)	765, 851, 1143
HinfI	GANTC	5 cut(s)	386, 878, 920, 1043, 1116
HphI	GGTGA	4 cut(s)	253, 266, 327, 681
Hpy166II	GTNNAC	2 cut(s)	400, 1169
Hpy188I	TCNGA	8 cut(s)	16, 178, 190, 568, 925, 965, 982, 1020
Hpy188III	TCNNGA	5 cut(s)	71, 546, 584, 735, 1085
Hpy8I	GTNNAC	2 cut(s)	400, 1169
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	360, 820
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	7 cut(s)	47, 227, 235, 746, 842, 886, 1072
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
HpyF3I	CTNAG	6 cut(s)	13, 189, 261, 567, 945, 1176
HpySE526I	ACGT	1 cut(s)	967
Hsp92II	CATG	3 cut(s)	765, 851, 1143
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	239, 265, 318, 1056
LweI	GCATC	6 cut(s)	34, 182, 214, 577, 740, 829
MaeI	CTAG	3 cut(s)	327, 390, 735
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	2 cut(s)	94, 254
MalI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
MboI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
MboII	GAAGA	9 cut(s)	177, 545, 587, 590, 678, 904, 929, 983, 1027
MfeI	CAATTG	3 cut(s)	516, 627, 755
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	7, 1075
Mph1103I	ATGCAT	1 cut(s)	844
MseI	TTAA	5 cut(s)	128, 299, 444, 905, 1121
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	3 cut(s)	516, 627, 755
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	623
NdeII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
NlaIII	CATG	3 cut(s)	765, 851, 1143
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	938
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	844
PaqCI	CACCTGC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	386, 878, 1043, 1116
PkrI	GCNGC	5 cut(s)	229, 280, 308, 911, 1071
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	5 cut(s)	116, 293, 357, 1112, 1181
RsaNI	GTAC	5 cut(s)	115, 292, 356, 1111, 1180
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	5 cut(s)	128, 299, 444, 905, 1121
SatI	GCNGC	5 cut(s)	228, 279, 307, 910, 1070
Sau3AI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
ScaI	AGTACT	1 cut(s)	1181
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	8 cut(s)	232, 256, 340, 646, 682, 938, 970, 1062
SfaNI	GCATC	6 cut(s)	34, 182, 214, 577, 740, 829
SmiMI	CAYNNNNRTG	1 cut(s)	222
SsiI	CCGC	3 cut(s)	373, 590, 910
SspMI	CTAG	3 cut(s)	327, 390, 735
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	2 cut(s)	360, 820
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	1 cut(s)	940
TatI	WGTACW	2 cut(s)	114, 1179
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	4 cut(s)	386, 878, 1043, 1116
Tru1I	TTAA	5 cut(s)	128, 299, 444, 905, 1121
Tru9I	TTAA	5 cut(s)	128, 299, 444, 905, 1121
TscAI	CASTG	4 cut(s)	112, 224, 794, 888
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	227, 278, 306, 1069
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	460, 905
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	4 cut(s)	112, 224, 794, 888
XapI	RAATTY	4 cut(s)	604, 719, 739, 1149
XbaI	TCTAGA	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	2 cut(s)	399, 1168
XspI	CTAG	3 cut(s)	327, 390, 735
ZrmI	AGTACT	1 cut(s)	1181
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.