Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

32555358 .. 32560200

Gene Structure 4843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1240200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGATAACCAGTAGCAGTTGTGTCGGTACATTTTGCCCGCGGGTCCTCAGGACGGCTGGGCTGCTGACTTTCACTCTCCGCCGGCGGCGTCTGACCACCGCCTGCTCTGTTTCAGCCACCAAGACTAAAGAGAAGGAGAAGGTGATAGTGGTATCTGGGCCCACCGGCTCCGGGAAGACTCGCCTCGCTCTGGAGCTCGCTAAGCGGCTCAATGGAGAGATTATAAGCGCCGACTCCGTCCAGGTATATCGGGGTCTTGATATTGGATCTGCCAAGCCTTCGCCAGCTGAAAGACAGGTGCTTGTGAGCCTTTCAGTTTATCTTACATTGCCGGTCCCAAGCCCGGATAAAGGAGGAGGGGGAGGGCGTCAGGTAGTCGACAGCCGGCACTCCTCGGTTACGTCGAATCCTTATGAAAATGAATCCAACCGAGCACAATGGCGTTCTAGGATTCATATAGCCGACCCCACTTGGTGGGAAAAGGCTTTGTTGTTGTTGTTGTTGAGGAGCCTTTCAGTTGGACAACGTCTCCCTTTGCATTCTATTCTCAACTGGTCTGTTATTAGTAACTGGAACTTGACCAACAAATTTGGTTCATTTGGTGGAATCATTGAGGTGCCACATCATCTTGTTGGCATACTGCACCCATCTGAAGACTATTCTGTTGGACGGTTTTTTTTTGAGGATGCTAGGCAAGCTATAAGAAGTATTCTTGATAGTGGCCGGGTTCCTATAGTTACTGGTGGTACTGGATTGTACTTGCGATGGTATATTGCATCTGAAGTGTATTCCGATTTAGAGGACCTACAGAAAAATGACGACTGGGATGCAGCTGTGGAGTTGGTGGTCAAGGCAGGTGACCCAAAGGCTCAACTTTTGGCTGCTAATGACTGGTATCGATTAAGACGCAGCCTTGAGATTATTATGTCTAGTGGATCACCTCCATCTGCATTTCAAATGCCGTATGATTCTTTCCGGAAACAGTGTGATGCAAATGACGCTAGTCCTTCAACTGATGTTACGGAGGAAGTAAAATCAAAGGAATTGGACTATGATTTTATTTGTTTTTTCCTCTCAAGCAAAAGAGTTGATCTTTATAAATCAATTGACTACCGATGTGAAGATATGCTATCAGGAAGTGATGGCATCTTGTCGGAAGCTAATTGGCTTCTTGATTCGGGTCTTCTTCCAAATTCAAATTCAGCAACCAGAGGAATTGGTTACAGACAAGCTATGGAGTATCTGTTGATGTGTAGGCAGCAAGGAGTTAGTTTTCCAAGAGAGTTCTACAATTTTTTATCTGAATTTCAGAAAGCATCTCGAAATTTTGCAAAACGGCAGTTAACATGGTTTCGCAACGAGCATATCTATAACTGGCTTGATGCTTCCAAACCCTTGGAAACAGTGCTCGACTTCATTTATGATGCATACCATGAAAACACCGAAAATTTGGTTGTGCCTGAATCACTGAGGATGAAGAAAGAATTAACAAGTCATCGAGAAGTTGCCGAACTAAAGGCTTATCGACCTAAAAATTGGCATTTTATCAGACGCGAAGATTGTTCAGACATTCTAGACTGGATAAGAAAAACACAGTGCTCCAACAACAAATCGGAACTTGATCATTCACTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

546

Amino Acids

61.82

Weight (kDa)

7.98

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	47 - 99	1.8e-07	Isopentenyl transferase
IPPT	PF01715	205 - 454	2.1e-45	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	224, 1098
AarI	CACCTGC	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	616
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	2 cut(s)	40, 1554
AccIII	TCCGGA	1 cut(s)	975
AciI	CCGC	6 cut(s)	38, 40, 79, 85, 99, 205
AclWI	GGATC	2 cut(s)	274, 943
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	6 cut(s)	587, 1192, 1198, 1304, 1324, 1447
AcuI	CTGAAG	2 cut(s)	672, 801
AcyI	GRCGYC	2 cut(s)	88, 367
AdeI	CACNNNGTG	1 cut(s)	474
AfaI	GTAC	3 cut(s)	28, 748, 758
AfiI	CCNNNNNNNGG	6 cut(s)	52, 171, 190, 343, 350, 474
AgsI	TTSAA	3 cut(s)	956, 1011, 1197
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	1183, 1215
AluBI	AGCT	6 cut(s)	196, 287, 698, 833, 1160, 1232
AluI	AGCT	6 cut(s)	196, 287, 698, 833, 1160, 1232
Alw21I	GWGCWC	4 cut(s)	198, 436, 1410, 1601
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	274, 943
Aor13HI	TCCGGA	1 cut(s)	975
AoxI	GGCC	2 cut(s)	158, 721
ApaI	GGGCCC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	61, 830, 881, 909, 1258
ApoI	RAATTY	6 cut(s)	587, 1192, 1198, 1304, 1324, 1447
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	5 cut(s)	43, 158, 159, 334, 802
AsuC2I	CCSGG	3 cut(s)	172, 344, 725
AsuHPI	GGTGA	3 cut(s)	154, 869, 930
AvaII	GGWCC	3 cut(s)	43, 334, 802
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	2 cut(s)	162, 198
BbsI	GAAGAC	3 cut(s)	182, 660, 1175
Bbv12I	GWGCWC	4 cut(s)	198, 436, 1410, 1601
BbvI	GCAGC	5 cut(s)	48, 842, 868, 921, 1270
BccI	CCATC	4 cut(s)	655, 759, 952, 1136
BceAI	ACGGC	3 cut(s)	69, 946, 1352
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 809, 843
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	1621
BcnI	CCSGG	3 cut(s)	172, 344, 725
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	5 cut(s)	447, 690, 930, 1002, 1574
BfmI	CTRYAG	2 cut(s)	732, 806
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	845
BisI	GCNGC	7 cut(s)	62, 86, 206, 831, 882, 910, 1259
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	7 cut(s)	63, 87, 207, 832, 883, 911, 1260
Bme1390I	CCNGG	4 cut(s)	172, 242, 344, 725
Bme18I	GGWCC	3 cut(s)	43, 334, 802
BmgT120I	GGNCC	5 cut(s)	43, 158, 159, 334, 802
BmiI	GGNNCC	7 cut(s)	44, 160, 169, 336, 509, 618, 729
BmrFI	CCNGG	4 cut(s)	172, 242, 344, 725
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	8 cut(s)	676, 785, 817, 979, 1155, 1325, 1372, 1414
BmuI	ACTGGG	1 cut(s)	832
BoxI	GACNNNNGTC	1 cut(s)	1002
BpiI	GAAGAC	3 cut(s)	182, 660, 1175
BpmI	CTGGAG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	935, 1060
BpuMI	CCSGG	3 cut(s)	172, 344, 725
Bsa29I	ATCGAT	1 cut(s)	898
BsaHI	GRCGYC	2 cut(s)	88, 367
BsaJI	CCNNGG	3 cut(s)	38, 393, 1395
BsaWI	WCCGGW	1 cut(s)	975
BsaXI	ACNNNNNCTCC	4 cut(s)	513, 543, 1229, 1259
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 171, 190, 343, 350, 474
Bse118I	RCCGGY	4 cut(s)	81, 164, 331, 384
Bse1I	ACTGG	9 cut(s)	9, 557, 575, 745, 754, 827, 896, 1379, 1583
Bse21I	CCTNAGG	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	975
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	898
BseDI	CCNNGG	3 cut(s)	38, 393, 1395
BseGI	GGATG	3 cut(s)	691, 832, 1479
BseLI	CCNNNNNNNGG	6 cut(s)	52, 171, 190, 343, 350, 474
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	61, 1460
BseNI	ACTGG	9 cut(s)	9, 557, 575, 745, 754, 827, 896, 1379, 1583
BseRI	GAGGAG	3 cut(s)	369, 382, 520
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	48, 842, 868, 921, 1270
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	2 cut(s)	40, 1554
BshFI	GGCC	2 cut(s)	160, 723
BshNI	GGYRCC	1 cut(s)	616
BshVI	ATCGAT	1 cut(s)	898
BsiHKAI	GWGCWC	4 cut(s)	198, 436, 1410, 1601
BsiSI	CCGG	8 cut(s)	82, 165, 171, 332, 344, 385, 724, 976
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	6 cut(s)	52, 171, 190, 343, 350, 474
BsmAI	GTCTC	1 cut(s)	533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	160, 723
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	5 cut(s)	162, 198, 436, 1410, 1601
Bsp13I	TCCGGA	1 cut(s)	975
Bsp143I	GATC	4 cut(s)	266, 935, 1090, 1621
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	6 cut(s)	38, 40, 79, 85, 99, 205
BspANI	GGCC	2 cut(s)	160, 723
BspCNI	CTCAG	2 cut(s)	60, 1461
BspDI	ATCGAT	1 cut(s)	898
BspEI	TCCGGA	1 cut(s)	975
BspFNI	CGCG	2 cut(s)	40, 1554
BspLI	GGNNCC	7 cut(s)	44, 160, 169, 336, 509, 618, 729
BspMI	ACCTGC	1 cut(s)	845
BspPI	GGATC	2 cut(s)	274, 943
BspT107I	GGYRCC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	4 cut(s)	81, 164, 331, 384
BsrI	ACTGG	9 cut(s)	9, 557, 575, 745, 754, 827, 896, 1379, 1583
BssAI	RCCGGY	4 cut(s)	81, 164, 331, 384
BssECI	CCNNGG	3 cut(s)	38, 393, 1395
BssMI	GATC	4 cut(s)	266, 935, 1090, 1621
BssNI	GRCGYC	2 cut(s)	88, 367
BssT1I	CCWWGG	1 cut(s)	1395
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	4 cut(s)	672, 984, 1405, 1596
BstACI	GRCGYC	2 cut(s)	88, 367
BstC8I	GCNNGC	7 cut(s)	38, 83, 103, 198, 285, 386, 696
BstDEI	CTNAG	3 cut(s)	47, 201, 1469
BstDSI	CCRYGG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	857
BstF5I	GGATG	3 cut(s)	691, 832, 1479
BstFNI	CGCG	2 cut(s)	40, 1554
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	4 cut(s)	269, 938, 1093, 1624
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	266, 935, 1090, 1621
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 695, 998
BstNI	CCWGG	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	1002
BstPI	GGTNACC	1 cut(s)	857
BstSCI	CCNGG	4 cut(s)	170, 240, 342, 723
BstSFI	CTRYAG	2 cut(s)	732, 806
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	2 cut(s)	40, 1554
BstV1I	GCAGC	5 cut(s)	48, 842, 868, 921, 1270
BstV2I	GAAGAC	3 cut(s)	182, 660, 1175
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	266
Bsu15I	ATCGAT	1 cut(s)	898
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	160, 723
BsuTUI	ATCGAT	1 cut(s)	898
BtgI	CCRYGG	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	691, 832, 1479
BtsIMutI	CAGTG	4 cut(s)	989, 1410, 1466, 1601
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	7 cut(s)	38, 83, 103, 198, 285, 386, 696
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	4 cut(s)	81, 164, 331, 384
Cfr13I	GGNCC	5 cut(s)	43, 158, 159, 334, 802
Cfr42I	CCGCGG	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	898
CseI	GACGC	5 cut(s)	77, 356, 915, 1007, 1560
Csp6I	GTAC	3 cut(s)	27, 747, 757
CviAII	CATG	2 cut(s)	1347, 1433
CviQI	GTAC	3 cut(s)	27, 747, 757
DdeI	CTNAG	3 cut(s)	47, 201, 1469
DpnI	GATC	4 cut(s)	268, 937, 1092, 1623
DpnII	GATC	4 cut(s)	266, 935, 1090, 1621
DraIII	CACNNNGTG	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	721
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	1395
Eco24I	GRGCYC	2 cut(s)	162, 198
Eco47I	GGWCC	3 cut(s)	43, 334, 802
Eco53kI	GAGCTC	1 cut(s)	196
Eco57I	CTGAAG	2 cut(s)	672, 801
Eco81I	CCTNAGG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	857
EcoICRI	GAGCTC	1 cut(s)	196
EcoO109I	RGGNCCY	2 cut(s)	43, 802
EcoO65I	GGTNACC	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	1395
EcoT22I	ATGCAT	1 cut(s)	1429
EcoT38I	GRGCYC	2 cut(s)	162, 198
ErhI	CCWWGG	1 cut(s)	1395
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	2 cut(s)	1350, 1436
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	1346, 1432
FauI	CCCGC	2 cut(s)	33, 45
FbaI	TGATCA	1 cut(s)	1621
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	7 cut(s)	62, 86, 206, 831, 882, 910, 1259
FokI	GGATG	3 cut(s)	698, 839, 1486
FriOI	GRGCYC	2 cut(s)	162, 198
Fsp4HI	GCNGC	7 cut(s)	62, 86, 206, 831, 882, 910, 1259
FspBI	CTAG	5 cut(s)	447, 690, 930, 1002, 1574
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	7 cut(s)	62, 86, 206, 831, 882, 910, 1259
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	160, 723
HapII	CCGG	8 cut(s)	82, 165, 171, 332, 344, 385, 724, 976
HgaI	GACGC	5 cut(s)	77, 356, 915, 1007, 1560
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	2 cut(s)	88, 367
Hin1II	CATG	2 cut(s)	1350, 1436
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	379, 1344
HindII	GTYRAC	2 cut(s)	379, 1344
HinfI	GANTC	9 cut(s)	178, 233, 406, 422, 451, 606, 968, 1175, 1463
HpaI	GTTAAC	1 cut(s)	1344
HpaII	CCGG	8 cut(s)	82, 165, 171, 332, 344, 385, 724, 976
HphI	GGTGA	3 cut(s)	154, 869, 930
Hpy166II	GTNNAC	2 cut(s)	379, 1344
Hpy8I	GTNNAC	2 cut(s)	379, 1344
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	127, 133, 288, 1017
HpyCH4III	ACNGT	4 cut(s)	672, 984, 1405, 1596
HpyCH4IV	ACGT	2 cut(s)	401, 526
HpyCH4V	TGCA	8 cut(s)	538, 643, 776, 830, 950, 992, 1331, 1427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 695, 998
HpyF3I	CTNAG	3 cut(s)	47, 201, 1469
HpySE526I	ACGT	2 cut(s)	401, 526
Hsp92I	GRCGYC	2 cut(s)	88, 367
Hsp92II	CATG	2 cut(s)	1350, 1436
HspAI	GCGC	1 cut(s)	228
Kpn2I	TCCGGA	1 cut(s)	975
KroI	GCCGGC	2 cut(s)	81, 384
KroNI	GCCGGC	2 cut(s)	83, 386
Ksp22I	TGATCA	1 cut(s)	1621
KspAI	GTTAAC	1 cut(s)	1344
KspI	CCGCGG	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	266, 935, 1090, 1621
LmnI	GCTCC	4 cut(s)	173, 193, 507, 1604
Lsp1109I	GCAGC	5 cut(s)	48, 842, 868, 921, 1270
LweI	GCATC	8 cut(s)	676, 785, 817, 979, 1155, 1325, 1372, 1414
MaeI	CTAG	5 cut(s)	447, 690, 930, 1002, 1574
MaeII	ACGT	2 cut(s)	401, 526
MaeIII	GTNAC	6 cut(s)	397, 566, 736, 857, 1018, 1220
MalI	GATC	4 cut(s)	268, 937, 1092, 1623
MboI	GATC	4 cut(s)	266, 935, 1090, 1621
MboII	GAAGA	7 cut(s)	187, 665, 1133, 1175, 1178, 1489, 1568
MfeI	CAATTG	1 cut(s)	1104
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	5 cut(s)	162, 198, 436, 1410, 1601
MlyI	GAGTC	2 cut(s)	172, 227
MmeI	TCCRAC	5 cut(s)	450, 499, 646, 1134, 1626
Mph1103I	ATGCAT	1 cut(s)	1429
MreI	CGCCGGCG	1 cut(s)	81
MroI	TCCGGA	1 cut(s)	975
MroNI	GCCGGC	2 cut(s)	81, 384
MseI	TTAA	3 cut(s)	902, 1343, 1487
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	3 cut(s)	40, 287, 833
MspI	CCGG	8 cut(s)	82, 165, 171, 332, 344, 385, 724, 976
MspR9I	CCNGG	4 cut(s)	172, 242, 344, 725
MunI	CAATTG	1 cut(s)	1104
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	2 cut(s)	40, 1554
MwoI	GCNNNNNNNGC	3 cut(s)	202, 695, 998
NaeI	GCCGGC	2 cut(s)	83, 386
NciI	CCSGG	3 cut(s)	172, 344, 725
NdeII	GATC	4 cut(s)	266, 935, 1090, 1621
NgoMIV	GCCGGC	2 cut(s)	81, 384
NlaIII	CATG	2 cut(s)	1350, 1436
NlaIV	GGNNCC	7 cut(s)	44, 160, 169, 336, 509, 618, 729
NmuCI	GTSAC	1 cut(s)	857
NsiI	ATGCAT	1 cut(s)	1429
PaqCI	CACCTGC	1 cut(s)	845
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	2 cut(s)	83, 386
PfeI	GAWTC	7 cut(s)	406, 422, 451, 606, 968, 1175, 1463
PflFI	GACNNNGTC	2 cut(s)	236, 525
PflMI	CCANNNNNTGG	1 cut(s)	474
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	7 cut(s)	63, 87, 207, 832, 883, 911, 1260
PleI	GAGTC	2 cut(s)	172, 227
PpsI	GAGTC	2 cut(s)	172, 227
PpuMI	RGGWCCY	2 cut(s)	43, 802
PshAI	GACNNNNGTC	1 cut(s)	1002
PsiI	TTATAA	2 cut(s)	224, 1098
Psp124BI	GAGCTC	1 cut(s)	198
Psp5II	RGGWCCY	2 cut(s)	43, 802
Psp6I	CCWGG	1 cut(s)	240
PspEI	GGTNACC	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	7 cut(s)	44, 160, 169, 336, 509, 618, 729
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	5 cut(s)	43, 158, 159, 334, 802
PspPPI	RGGWCCY	2 cut(s)	43, 802
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	2 cut(s)	236, 525
PvuII	CAGCTG	2 cut(s)	287, 833
RsaI	GTAC	3 cut(s)	28, 748, 758
RsaNI	GTAC	3 cut(s)	27, 747, 757
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	41
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	902, 1343, 1487
SatI	GCNGC	7 cut(s)	62, 86, 206, 831, 882, 910, 1259
Sau3AI	GATC	4 cut(s)	266, 935, 1090, 1621
Sau96I	GGNCC	5 cut(s)	43, 158, 159, 334, 802
SchI	GAGTC	2 cut(s)	172, 227
ScrFI	CCNGG	4 cut(s)	172, 242, 344, 725
SduI	GDGCHC	5 cut(s)	162, 198, 436, 1410, 1601
SfaNI	GCATC	8 cut(s)	676, 785, 817, 979, 1155, 1325, 1372, 1414
SfcI	CTRYAG	2 cut(s)	732, 806
Sfr303I	CCGCGG	1 cut(s)	41
SgrAI	CRCCGGYG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	41
SinI	GGWCC	3 cut(s)	43, 334, 802
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	914, 1075
SmoI	CTYRAG	2 cut(s)	914, 1075
SsiI	CCGC	6 cut(s)	38, 40, 79, 85, 99, 205
SspMI	CTAG	5 cut(s)	447, 690, 930, 1002, 1574
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	4 cut(s)	170, 240, 342, 723
StyI	CCWWGG	1 cut(s)	1395
TaaI	ACNGT	4 cut(s)	672, 984, 1405, 1596
TaiI	ACGT	2 cut(s)	404, 529
TaqI	TCGA	7 cut(s)	378, 404, 898, 1321, 1410, 1498, 1525
TatI	WGTACW	1 cut(s)	756
TauI	GCSGC	2 cut(s)	88, 208
TfiI	GAWTC	7 cut(s)	406, 422, 451, 606, 968, 1175, 1463
Tru1I	TTAA	3 cut(s)	902, 1343, 1487
Tru9I	TTAA	3 cut(s)	902, 1343, 1487
TscAI	CASTG	4 cut(s)	989, 1410, 1473, 1601
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	5 cut(s)	61, 830, 881, 909, 1258
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	8 cut(s)	429, 435, 443, 585, 1405, 1449, 1490, 1622
TspGWI	ACGGA	2 cut(s)	226, 1037
TspRI	CASTG	4 cut(s)	989, 1410, 1473, 1601
Tth111I	GACNNNGTC	2 cut(s)	236, 525
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	3 cut(s)	43, 334, 802
XapI	RAATTY	6 cut(s)	587, 1192, 1198, 1304, 1324, 1447
XbaI	TCTAGA	1 cut(s)	1573
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	5 cut(s)	447, 690, 930, 1002, 1574
Zsp2I	ATGCAT	1 cut(s)	1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.