Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

55684001 .. 55694668

Gene Structure 10668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAAGAAAAGTGAATCACACAACACATTTAGTAAACTTACGTTGTATAAGGTGTTTAAAATTCTGAAGTTTTTGTTTAGAAGGTTATTGCACAACGGATACAAGAATAATCTGTTTTTTTGGTTGTCATATTCAAATTATCATGTAGTTTCTGTGATTAACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTTCTTGCGATGTGTCTTTTCGGTTGTATTCATAACATTATTTGTTGTTATAAATATCAAGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTTTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAAGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCACCTCTATCTGCCTTCGAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTATGGAGGAATTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTGTCTGAGGCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGTTACAGAAACTTTTTTATTATTCAAACAATCATTCTTGATTTTTTTTTGCCATTAGAATCTTATGCACTTTTGTGTAGGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGACAACGGCTCACTCTACAACGGTGGGACTCCAAATCCCACATCGGAGAAAGGGGATGGACTAGTGGTCTCGATTCGTGGCACCAAGAGAGAGAGAGGATGAACTGGATTAGGAATCCAACTAGGAATACGCAATCTAATGAAACTAGACTAAGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

376

Amino Acids

43.64

Weight (kDa)

8.6

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	54 - 280	8.8e-26	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	2 cut(s)	483, 1050
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	2 cut(s)	565, 782
AcsI	RAATTY	4 cut(s)	60, 632, 796, 953
AcuI	CTGAAG	2 cut(s)	86, 390
AfaI	GTAC	2 cut(s)	485, 549
AgsI	TTSAA	3 cut(s)	135, 848, 959
AhdI	GACNNNNNGTC	1 cut(s)	1035
AhlI	ACTAGT	1 cut(s)	1031
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	787, 819
AleI	CACNNNNGTG	1 cut(s)	895
AluBI	AGCT	2 cut(s)	200, 422
AluI	AGCT	2 cut(s)	200, 422
Alw26I	GTCTC	1 cut(s)	1043
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	1 cut(s)	762
ApeKI	GCWGC	3 cut(s)	419, 470, 498
ApoI	RAATTY	4 cut(s)	60, 632, 796, 953
Asp718I	GGTACC	1 cut(s)	483
AsuHPI	GGTGA	3 cut(s)	445, 519, 915
AsuII	TTCGAA	1 cut(s)	543
AxyI	CCTNAGG	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	483, 1050
BbvI	GCAGC	3 cut(s)	431, 457, 510
BccI	CCATC	3 cut(s)	740, 762, 1020
BceAI	ACGGC	1 cut(s)	992
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	1043
BcuI	ACTAGT	1 cut(s)	1031
BfaI	CTAG	6 cut(s)	519, 582, 969, 1032, 1092, 1116
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	420, 471, 499
BlsI	GCNGC	3 cut(s)	421, 472, 500
Bme1390I	CCNGG	1 cut(s)	503
BmeRI	GACNNNNNGTC	1 cut(s)	1035
BmiI	GGNNCC	2 cut(s)	485, 1052
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	5 cut(s)	178, 374, 406, 769, 974
BmuI	ACTGGG	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	1043
Bse1I	ACTGG	4 cut(s)	247, 256, 416, 1079
Bse21I	CCTNAGG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	503
BseGI	GGATG	3 cut(s)	421, 1031, 1074
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	4 cut(s)	247, 256, 416, 1079
BseXI	GCAGC	3 cut(s)	431, 457, 510
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	764
BshNI	GGYRCC	2 cut(s)	483, 1050
BslFI	GGGAC	1 cut(s)	1010
BsmAI	GTCTC	1 cut(s)	1043
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	764
Bso31I	GGTCTC	1 cut(s)	1043
Bsp119I	TTCGAA	1 cut(s)	543
Bsp143I	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
BspACI	CCGC	2 cut(s)	565, 782
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	751
BspLI	GGNNCC	2 cut(s)	485, 1052
BspT104I	TTCGAA	1 cut(s)	543
BspT107I	GGYRCC	2 cut(s)	483, 1050
BspTNI	GGTCTC	1 cut(s)	1043
BsrI	ACTGG	4 cut(s)	247, 256, 416, 1079
BssMI	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	552, 993
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	453, 759, 1121
BstF5I	GGATG	3 cut(s)	421, 1031, 1074
BstKTI	GATC	6 cut(s)	363, 438, 510, 527, 697, 707
BstMAI	GTCTC	1 cut(s)	1043
BstMBI	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 815
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	431, 457, 510
Bsu36I	CCTNAGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	764
BtgZI	GCGATG	2 cut(s)	280, 733
BtsCI	GGATG	3 cut(s)	421, 1031, 1074
BtsIMutI	CAGTG	2 cut(s)	249, 409
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	743
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	484, 548
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	9 cut(s)	200, 350, 422, 458, 470, 501, 764, 772, 979
CviKI_1	RGCY	9 cut(s)	200, 350, 422, 458, 470, 501, 764, 772, 979
CviQI	GTAC	2 cut(s)	484, 548
DdeI	CTNAG	3 cut(s)	453, 759, 1121
DpnI	GATC	6 cut(s)	362, 437, 509, 526, 696, 706
DpnII	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
DraI	TTTAAA	2 cut(s)	58, 637
DriI	GACNNNNNGTC	1 cut(s)	1035
Eam1105I	GACNNNNNGTC	1 cut(s)	1035
Eco31I	GGTCTC	1 cut(s)	1043
Eco57I	CTGAAG	2 cut(s)	86, 390
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	501
FaeI	CATG	1 cut(s)	146
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	435
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	3 cut(s)	420, 471, 499
FokI	GGATG	3 cut(s)	428, 1038, 1081
Fsp4HI	GCNGC	3 cut(s)	420, 471, 499
FspBI	CTAG	6 cut(s)	519, 582, 969, 1032, 1092, 1116
GluI	GCNGC	3 cut(s)	420, 471, 499
GsuI	CTGGAG	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	764
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	7 cut(s)	14, 557, 578, 881, 998, 1043, 1084
HphI	GGTGA	3 cut(s)	445, 519, 915
Hpy166II	GTNNAC	2 cut(s)	35, 592
Hpy188I	TCNGA	4 cut(s)	66, 370, 760, 1016
Hpy188III	TCNNGA	6 cut(s)	215, 738, 776, 860, 969, 1040
Hpy8I	GTNNAC	2 cut(s)	35, 592
HpyAV	CCTTC	2 cut(s)	75, 550
HpyCH4III	ACNGT	2 cut(s)	552, 993
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	5 cut(s)	91, 191, 419, 427, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 815
HpyF3I	CTNAG	3 cut(s)	453, 759, 1121
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	146
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
LmnI	GCTCC	1 cut(s)	904
Lsp1109I	GCAGC	3 cut(s)	431, 457, 510
LweI	GCATC	5 cut(s)	178, 374, 406, 769, 974
MaeI	CTAG	6 cut(s)	519, 582, 969, 1032, 1092, 1116
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	238, 446, 824
MalI	GATC	6 cut(s)	362, 437, 509, 526, 696, 706
MboI	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
MboII	GAAGA	3 cut(s)	16, 737, 912
MfeI	CAATTG	2 cut(s)	708, 819
MlyI	GAGTC	1 cut(s)	992
MmeI	TCCRAC	2 cut(s)	151, 1112
MnlI	CCTC	8 cut(s)	361, 540, 622, 622, 686, 754, 905, 1059
MseI	TTAA	5 cut(s)	57, 159, 320, 491, 636
MslI	CAYNNNNRTG	2 cut(s)	414, 895
MspA1I	CMGCKG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	503
MunI	CAATTG	2 cut(s)	708, 819
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	197, 815
NdeII	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	2 cut(s)	485, 1052
NmuCI	GTSAC	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	543
OliI	CACNNNNGTG	1 cut(s)	895
PfeI	GAWTC	6 cut(s)	14, 557, 578, 881, 1043, 1084
PkrI	GCNGC	3 cut(s)	421, 472, 500
PleI	GAGTC	1 cut(s)	992
PpsI	GAGTC	1 cut(s)	992
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	485, 1052
PstNI	CAGNNNCTG	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	485, 549
RsaNI	GTAC	2 cut(s)	484, 548
RseI	CAYNNNNRTG	2 cut(s)	414, 895
SaqAI	TTAA	5 cut(s)	57, 159, 320, 491, 636
SatI	GCNGC	3 cut(s)	420, 471, 499
Sau3AI	GATC	6 cut(s)	360, 435, 507, 524, 694, 704
SchI	GAGTC	1 cut(s)	992
ScrFI	CCNGG	1 cut(s)	503
SetI	ASST	8 cut(s)	44, 54, 86, 202, 209, 424, 532, 916
SfaNI	GCATC	5 cut(s)	178, 374, 406, 769, 974
SfuI	TTCGAA	1 cut(s)	543
SmiI	ATTTAAAT	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	414, 895
SpeI	ACTAGT	1 cut(s)	1031
SsiI	CCGC	2 cut(s)	565, 782
SspMI	CTAG	6 cut(s)	519, 582, 969, 1032, 1092, 1116
StyD4I	CCNGG	1 cut(s)	501
SwaI	ATTTAAAT	1 cut(s)	637
TaaI	ACNGT	2 cut(s)	552, 993
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	543, 1041
TfiI	GAWTC	6 cut(s)	14, 557, 578, 881, 1043, 1084
Tru1I	TTAA	5 cut(s)	57, 159, 320, 491, 636
Tru9I	TTAA	5 cut(s)	57, 159, 320, 491, 636
TscAI	CASTG	2 cut(s)	256, 416
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	419, 470, 498
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	17, 277, 652, 1085, 1125
TspGWI	ACGGA	2 cut(s)	111, 157
TspRI	CASTG	2 cut(s)	256, 416
XapI	RAATTY	4 cut(s)	60, 632, 796, 953
XbaI	TCTAGA	1 cut(s)	968
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	6 cut(s)	519, 582, 969, 1032, 1092, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.