Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

13418328 .. 13420936

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTATTATTCTTCAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGCTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTTTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGTTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGTTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCACCTCCATCTGCCTTCAAAGTACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTGTTTGAGCCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGTGTGTAGGGAGCAAGGAGGTAGTTCTTCACCAAGAGAGTTCTACAACTTGTTGACTGAATTTCAAAAGGCATCTAGAAATTTTGTAAAATGGCAATTGACATGGTTTTGTAACGAGCATATCTATCACTGGCTTGACGCTTCCAAACCCTTGGTATGCTCTCCAATTTGTTTCCATTATTTGCTAGAGATGCATTTTATCAGACATGAAGATTGTTCAGATATTCTAGACTGGATACAGAGAACACAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

294

Amino Acids

33.92

Weight (kDa)

5.24

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 248	2.3e-31	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	373, 590
AcsI	RAATTY	3 cut(s)	604, 689, 709
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	3 cut(s)	116, 293, 357
AgsI	TTSAA	2 cut(s)	352, 695
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	3 cut(s)	604, 689, 709
Asp718I	GGTACC	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	253, 266, 327, 651
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	4 cut(s)	117, 349, 548, 570
BciT130I	CCWGG	1 cut(s)	311
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	1 cut(s)	243
BfaI	CTAG	5 cut(s)	327, 390, 705, 815, 857
BfuAI	ACCTGC	1 cut(s)	242
BfuI	GTATCC	1 cut(s)	858
BglI	GCCNNNNNGGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	6 cut(s)	34, 182, 214, 577, 710, 810
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	780
Bse1I	ACTGG	5 cut(s)	103, 112, 224, 764, 866
Bse21I	CCTNAGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	1 cut(s)	229
BseNI	ACTGG	5 cut(s)	103, 112, 224, 764, 866
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BspACI	CCGC	2 cut(s)	373, 590
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	291
BsrI	ACTGG	5 cut(s)	103, 112, 224, 764, 866
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	261
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
BstMBI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 577, 623, 820
BstNI	CCWGG	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	781
Bsu36I	CCTNAGG	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	858
BtgZI	GCGATG	2 cut(s)	136, 541
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	105, 217, 757
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	551
CseI	GACGC	2 cut(s)	312, 776
Csp6I	GTAC	3 cut(s)	115, 292, 356
CviAII	CATG	2 cut(s)	732, 836
CviJI	RGCY	9 cut(s)	56, 127, 158, 266, 309, 571, 580, 763, 882
CviKI_1	RGCY	9 cut(s)	56, 127, 158, 266, 309, 571, 580, 763, 882
CviQI	GTAC	3 cut(s)	115, 292, 356
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
DpnII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	780
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	2 cut(s)	735, 839
FatI	CATG	2 cut(s)	731, 835
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	5 cut(s)	327, 390, 705, 815, 857
GluI	GCNGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	332
HgaI	GACGC	2 cut(s)	312, 776
Hin1II	CATG	2 cut(s)	735, 839
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	2 cut(s)	365, 386
HphI	GGTGA	4 cut(s)	253, 266, 327, 651
Hpy166II	GTNNAC	2 cut(s)	400, 684
Hpy188I	TCNGA	4 cut(s)	16, 178, 833, 850
Hpy188III	TCNNGA	5 cut(s)	71, 546, 584, 705, 857
Hpy8I	GTNNAC	2 cut(s)	400, 684
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	47, 227, 235, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 577, 623, 820
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	735, 839
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	6 cut(s)	34, 182, 214, 577, 710, 810
MaeI	CTAG	5 cut(s)	327, 390, 705, 815, 857
MaeIII	GTNAC	3 cut(s)	94, 254, 740
MalI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
MboI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
MboII	GAAGA	4 cut(s)	3, 545, 648, 851
MfeI	CAATTG	3 cut(s)	516, 627, 725
MhlI	GDGCHC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	6 cut(s)	169, 348, 430, 430, 494, 641
Mph1103I	ATGCAT	1 cut(s)	825
MseI	TTAA	2 cut(s)	299, 444
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	3 cut(s)	516, 627, 725
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	53, 577, 623, 820
NdeII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
NlaIII	CATG	2 cut(s)	735, 839
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	825
PaqCI	CACCTGC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	365, 386
PkrI	GCNGC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	116, 293, 357
RsaNI	GTAC	3 cut(s)	115, 292, 356
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	299, 444
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	5 cut(s)	58, 65, 256, 340, 652
SfaNI	GCATC	6 cut(s)	34, 182, 214, 577, 710, 810
SmiMI	CAYNNNNRTG	1 cut(s)	222
SsiI	CCGC	2 cut(s)	373, 590
SspMI	CTAG	5 cut(s)	327, 390, 705, 815, 857
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	1 cut(s)	360
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	365, 386
Tru1I	TTAA	2 cut(s)	299, 444
Tru9I	TTAA	2 cut(s)	299, 444
TscAI	CASTG	3 cut(s)	112, 224, 764
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	460, 852
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	3 cut(s)	112, 224, 764
XapI	RAATTY	3 cut(s)	604, 689, 709
XbaI	TCTAGA	2 cut(s)	704, 856
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	5 cut(s)	327, 390, 705, 815, 857
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.