Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

55724269 .. 55724750

Gene Structure 482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGTATTATTCTTCAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGTCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

53

Amino Acids

6.03

Weight (kDa)

7.85

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 51	1e-09	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	116
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
BccI	CCATC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	103, 112
BseNI	ACTGG	2 cut(s)	103, 112
BsrI	ACTGG	2 cut(s)	103, 112
BstC8I	GCNNGC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BtgZI	GCGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	2 cut(s)	56, 158
CviKI_1	RGCY	2 cut(s)	56, 158
CviQI	GTAC	1 cut(s)	115
FaiI	YATR	4 cut(s)	39, 92, 133, 135
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
LpnPI	CCDG	3 cut(s)	84, 93, 156
LweI	GCATC	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	94, 103
MboII	GAAGA	1 cut(s)	3
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	7
MseI	TTAA	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	128
SetI	ASST	2 cut(s)	58, 65
SfaNI	GCATC	1 cut(s)	34
SgeI	CNNG	9 cut(s)	60, 65, 72, 83, 95, 111, 120, 130, 155
Sse9I	AATT	1 cut(s)	32
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.