Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Reverse (-)

37154896 .. 37156306

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45360

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTATTATTCTTCAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCAATGGTTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTTTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGCTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCACCTCCATCTGCCTTCGAAATACCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCTTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATCTTATCTGAGGCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGCTATGGAGTATTTGTTAGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

218

Amino Acids

24.46

Weight (kDa)

4.64

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	4 - 216	4.7e-30	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	373, 590
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	116, 293
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	3 cut(s)	56, 230, 238
AluI	AGCT	3 cut(s)	56, 230, 238
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	4 cut(s)	227, 235, 278, 306
ApoI	RAATTY	1 cut(s)	604
Asp718I	GGTACC	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	253, 266, 327
AsuII	TTCGAA	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	239, 247, 265, 318
BccI	CCATC	3 cut(s)	349, 548, 570
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	243
BfaI	CTAG	2 cut(s)	327, 390
BfuAI	ACCTGC	1 cut(s)	242
BisI	GCNGC	4 cut(s)	228, 236, 279, 307
BlsI	GCNGC	4 cut(s)	229, 237, 280, 308
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	311
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	4 cut(s)	34, 182, 214, 577
BmuI	ACTGGG	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	351
BsaXI	ACNNNNNCTCC	1 cut(s)	630
Bse1I	ACTGG	3 cut(s)	103, 112, 224
Bse21I	CCTNAGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	3 cut(s)	103, 112, 224
BseXI	GCAGC	4 cut(s)	239, 247, 265, 318
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BspACI	CCGC	2 cut(s)	373, 590
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	103, 112, 224
BssMI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	261, 567
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	6 cut(s)	171, 246, 318, 335, 505, 515
BstMBI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 623
BstNI	CCWGG	1 cut(s)	311
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	309
BstV1I	GCAGC	4 cut(s)	239, 247, 265, 318
Bsu36I	CCTNAGG	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	572
BtgZI	GCGATG	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	105, 217
BveI	ACCTGC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	551
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	115, 292
CviQI	GTAC	2 cut(s)	115, 292
DdeI	CTNAG	2 cut(s)	261, 567
DpnI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
DpnII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	309
FaiI	YATR	9 cut(s)	39, 92, 133, 135, 363, 465, 508, 539, 636
FauI	CCCGC	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	228, 236, 279, 307
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	228, 236, 279, 307
FspBI	CTAG	2 cut(s)	327, 390
GluI	GCNGC	4 cut(s)	228, 236, 279, 307
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	572
HgaI	GACGC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	365, 386
HphI	GGTGA	3 cut(s)	253, 266, 327
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	3 cut(s)	16, 178, 568
Hpy188III	TCNNGA	3 cut(s)	71, 546, 584
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	47, 121, 227, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 623
HpyF3I	CTNAG	2 cut(s)	261, 567
KpnI	GGTACC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
Lsp1109I	GCAGC	4 cut(s)	239, 247, 265, 318
LweI	GCATC	4 cut(s)	34, 182, 214, 577
MaeI	CTAG	2 cut(s)	327, 390
MaeIII	GTNAC	2 cut(s)	94, 254
MalI	GATC	6 cut(s)	170, 245, 317, 334, 504, 514
MboI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
MboII	GAAGA	3 cut(s)	3, 411, 545
MfeI	CAATTG	2 cut(s)	516, 627
MluCI	AATT	7 cut(s)	32, 269, 455, 516, 604, 610, 627
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	5 cut(s)	169, 348, 430, 494, 562
MseI	TTAA	3 cut(s)	128, 299, 444
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	230, 238
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	2 cut(s)	516, 627
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	53, 623
NdeII	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	254
NspV	TTCGAA	1 cut(s)	351
PaqCI	CACCTGC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	365, 386
PkrI	GCNGC	4 cut(s)	229, 237, 280, 308
Psp6I	CCWGG	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	293
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	2 cut(s)	230, 238
RsaI	GTAC	2 cut(s)	116, 293
RsaNI	GTAC	2 cut(s)	115, 292
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	128, 299, 444
SatI	GCNGC	4 cut(s)	228, 236, 279, 307
Sau3AI	GATC	6 cut(s)	168, 243, 315, 332, 502, 512
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	6 cut(s)	58, 65, 232, 240, 256, 340
SfaNI	GCATC	4 cut(s)	34, 182, 214, 577
SfuI	TTCGAA	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	7 cut(s)	32, 269, 455, 516, 604, 610, 627
SsiI	CCGC	2 cut(s)	373, 590
SspMI	CTAG	2 cut(s)	327, 390
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	351
TasI	AATT	7 cut(s)	32, 269, 455, 516, 604, 610, 627
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	2 cut(s)	365, 386
Tru1I	TTAA	3 cut(s)	128, 299, 444
Tru9I	TTAA	3 cut(s)	128, 299, 444
TscAI	CASTG	2 cut(s)	112, 224
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	227, 235, 278, 306
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	112, 224
XapI	RAATTY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	2 cut(s)	327, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.