Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

13375529 .. 13385297

Gene Structure 9769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG073200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAGGTTGTTTTGATTCACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGCTAATATATGGAAAACCAGATGTTCCCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTTTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGTTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGTTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTAGATCACCTCCATCTGTCTTCAAAGTACCGTCTGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGTAGACACTAATGACATTAGTTCCTCTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGTGAAAGTGTTGAAGTGTGGCTGTGGTCTCGTCCGACATGGTGAAGAGGAGGTAAGTGGAAGGGCTACACCGGAAGATCCGGTGGATGGACAAGCGATCACAAAGTACGAACCAACTCCAAAACATAGTGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

228

Amino Acids

25.68

Weight (kDa)

5.37

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	7 - 184	1.5e-23	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	4 cut(s)	119, 296, 360, 656
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	355, 562
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	309
Asp718I	GGTACC	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	256, 269, 330, 602
AxyI	CCTNAGG	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	120, 352, 629
BciT130I	CCWGG	1 cut(s)	314
BclI	TGATCA	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	2 cut(s)	330, 393
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	3 cut(s)	37, 185, 217
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	581
BsaWI	WCCGGW	2 cut(s)	619, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	106, 115, 227
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	232, 640
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseNI	ACTGG	3 cut(s)	106, 115, 227
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	620, 629
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	581
Bsp143I	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
BspACI	CCGC	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	106, 115, 227
BssMI	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	232, 640
BstKTI	GATC	8 cut(s)	174, 249, 321, 338, 508, 518, 628, 648
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu36I	CCTNAGG	1 cut(s)	264
BtgZI	GCGATG	2 cut(s)	139, 544
BtsCI	GGATG	2 cut(s)	232, 640
BtsIMutI	CAGTG	3 cut(s)	108, 220, 555
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	4 cut(s)	118, 295, 359, 655
CviAII	CATG	1 cut(s)	587
CviJI	RGCY	7 cut(s)	59, 130, 161, 269, 312, 570, 614
CviKI_1	RGCY	7 cut(s)	59, 130, 161, 269, 312, 570, 614
CviQI	GTAC	4 cut(s)	118, 295, 359, 655
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	8 cut(s)	173, 248, 320, 337, 507, 517, 627, 647
DpnII	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	264
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	590
FaiI	YATR	9 cut(s)	42, 95, 136, 138, 468, 511, 542, 588, 675
FatI	CATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	2 cut(s)	239, 647
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	330, 393
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	335
HapII	CCGG	2 cut(s)	620, 629
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	590
HinfI	GANTC	3 cut(s)	16, 368, 389
HpaII	CCGG	2 cut(s)	620, 629
HphI	GGTGA	4 cut(s)	256, 269, 330, 602
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	181, 367, 584
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	603
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	50, 230, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	590
KpnI	GGTACC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
LpnPI	CCDG	9 cut(s)	87, 96, 159, 208, 240, 299, 326, 633, 642
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	37, 185, 217
MaeI	CTAG	2 cut(s)	330, 393
MaeIII	GTNAC	2 cut(s)	97, 257
MalI	GATC	8 cut(s)	173, 248, 320, 337, 507, 517, 627, 647
MboI	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
MboII	GAAGA	4 cut(s)	343, 548, 605, 635
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	625
MluCI	AATT	4 cut(s)	35, 272, 458, 519
MmeI	TCCRAC	2 cut(s)	10, 607
MnlI	CCTC	7 cut(s)	172, 351, 433, 433, 497, 589, 592
MseI	TTAA	2 cut(s)	302, 447
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	2 cut(s)	620, 629
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
NlaIII	CATG	1 cut(s)	590
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	16, 368, 389
PkrI	GCNGC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	4 cut(s)	119, 296, 360, 656
RsaNI	GTAC	4 cut(s)	118, 295, 359, 655
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	302, 447
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	8 cut(s)	171, 246, 318, 335, 505, 515, 625, 645
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	6 cut(s)	9, 61, 68, 259, 343, 603
SfaNI	GCATC	3 cut(s)	37, 185, 217
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	35, 272, 458, 519
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	2 cut(s)	330, 393
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	363
TasI	AATT	4 cut(s)	35, 272, 458, 519
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	16, 368, 389
Tru1I	TTAA	2 cut(s)	302, 447
Tru9I	TTAA	2 cut(s)	302, 447
TscAI	CASTG	3 cut(s)	115, 227, 555
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	17, 463
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	3 cut(s)	115, 227, 555
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	330, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.