Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001266

Physical Location & Seq

Genomic Coordinates Forward (+)

34703972 .. 34707905

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGTATTTATTATTATGTAGGGAGCAAGGAGGCAGTTCTTCACCAAGAGAGTTCTACAACTTTTTGACTGAATTTCAAAAGGCATCTAGAAATTTTGCAAAACGGCAATTGACATGGTTTCGTAATGAGCATATCTATAACTGGCTTGACGCTTCCAAACCCTTGGATACTGTTCTAAACTTTATTTGTGATGCATACCATGACAAAAGTGGAAATTGGGTTGTGCCTGAATCACTGCAAATGAAGAAAGAATTATCAAGCCGCCGAGAAGAGTCTGAACTAAAGAGCTATCGAACTAAGAACAGGCATTTTATCAGACGTGAAGATTGTTCAGATATTCTAGACTGGATACAGAGAACACAAGGTCTGAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016765 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052381 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00908 ko01100 ko01110 map00908 map01100 map01110

Pfam Domains

Protein Families

IPPT

Protein Analysis

126

Amino Acids

15.23

Weight (kDa)

8.81

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20040 AT5G20040 AT5G20040
fragaria_vesca	FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660 FvH4_3g18660
malus_domestica	MD03G1240200.v1.1 MD11G1259500.v1.1
prunus_persica	Prupe.4G170400_v2.0.a1 Prupe.4G170400_v2.0.a1
pyrus_communis	pycom03g18540 pycom11g22930
rosa_chinensis	RchiOBHm_Chr0c28g0500971 RchiOBHm_Chr0c28g0501011 RchiOBHm_Chr0c28g0501061 RchiOBHm_Chr1g0325431 RchiOBHm_Chr3g0490501 RchiOBHm_Chr5g0031481 RchiOBHm_Chr5g0052511 RchiOBHm_Chr6g0273141 RchiOBHm_Chr7g0217341 RchiOBHm_Chr7g0243571 RchiOBHm_Chr7g0243611
rosa_laevigata	RLG00000002491 RLG00000015074 RLG00000033314
rosa_multiflora	Rmu_sc0000404.1_g000011 Rmu_ssc0000480.1_g000027
rosa_roxburghii	Rroxscaffold_1G00026620 Rroxscaffold_1G00039590 Rroxscaffold_1G00048840 Rroxscaffold_3G00242320 Rroxscaffold_3G00242330 Rroxscaffold_3G00247160
rosa_rugosa	Rorug05G0126200 Rorug07G0168200 Rorug07G0168200 Rorug07G0168300
rosa_samantha	Rh1DG073200 Rh4AG212400 Rh5CG242100 Rh5CG469300 Rh5DG224000 Rh5DG370500 Rh7BG298500 Rh7CG171500 Rh7CG326700 Rh7DG307000
rosa_wichuraiana	Rw0G010090 Rw4G018030 Rw5G019980 Rw7G026100 Rw7G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	265
AcsI	RAATTY	2 cut(s)	74, 94
AgsI	TTSAA	1 cut(s)	80
AjiI	CACGTC	1 cut(s)	323
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
ApoI	RAATTY	2 cut(s)	74, 94
AsuHPI	GGTGA	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	122
BciVI	GTATCC	2 cut(s)	163, 345
BfaI	CTAG	2 cut(s)	90, 344
BfuI	GTATCC	2 cut(s)	163, 345
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	323
BmsI	GCATC	2 cut(s)	95, 184
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	149, 353
BseDI	CCNNGG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	149, 353
BspACI	CCGC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	149, 353
BssECI	CCNNGG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuI	GTATCC	2 cut(s)	163, 345
BtrI	CACGTC	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
CseI	GACGC	1 cut(s)	161
CviAII	CATG	2 cut(s)	117, 203
CviJI	RGCY	3 cut(s)	148, 264, 291
CviKI_1	RGCY	3 cut(s)	148, 264, 291
DdeI	CTNAG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	120, 206
FaiI	YATR	6 cut(s)	19, 118, 135, 141, 199, 204
FatI	CATG	2 cut(s)	116, 202
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	2 cut(s)	90, 344
GluI	GCNGC	1 cut(s)	265
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	120, 206
HinfI	GANTC	2 cut(s)	233, 275
HphI	GGTGA	1 cut(s)	36
Hpy188I	TCNGA	4 cut(s)	280, 320, 337, 372
Hpy188III	TCNNGA	2 cut(s)	90, 344
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	3 cut(s)	101, 197, 241
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	2 cut(s)	120, 206
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	4 cut(s)	130, 243, 292, 334
LweI	GCATC	2 cut(s)	95, 184
MaeI	CTAG	2 cut(s)	90, 344
MaeII	ACGT	1 cut(s)	322
MboII	GAAGA	4 cut(s)	33, 259, 284, 338
MfeI	CAATTG	1 cut(s)	110
MluCI	AATT	5 cut(s)	74, 94, 110, 217, 254
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	199
MunI	CAATTG	1 cut(s)	110
NlaIII	CATG	2 cut(s)	120, 206
NmeAIII	GCCGAG	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
SatI	GCNGC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	284
SetI	ASST	3 cut(s)	293, 325, 370
SfaNI	GCATC	2 cut(s)	95, 184
Sse9I	AATT	5 cut(s)	74, 94, 110, 217, 254
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	90, 344
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	74, 94, 110, 217, 254
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	233
TscAI	CASTG	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	243
XapI	RAATTY	2 cut(s)	74, 94
XbaI	TCTAGA	2 cut(s)	89, 343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	90, 344
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.