Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

8903404 .. 8906319

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTAACGCTCCGCCAGAGGACGATGGTGGTCACCGGAGAACCGGAACAGAAGAAGGAAGAAGAACGACTCTGCGAAGACTTAACGATTCTTTCCTCCGATTCAGACAACGATTCTTCCTCCGATTCGGCGGTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTTGGACCACTTGTCTCGGAGAAATTGAAGTTCACAGCTGAAGAAATTGAGATGGGTCTTATCGAGTCCAACACTACAAATGCTCAGCTTCACATTGCACTTTTGAAGGGGATACCACCGGTGAATAAAACGCTTGACGATGCAAATGCATGGATCACGGTGTTGTGTAAGAAACTAGCTCCATGGTGGCCATGGATTGCTAAGGGTGAAATTCATATTACTGTTAACAAAGGGGAGGAAATATCTGAATACCAAGGACTTGACTCTATTAACCGCCTGAAGATTTTGAAGGCACTTTGTGAGCTTCGAGTTCAACAAGATGATGCACGTTCGTATATTCAAGAAAATACCAAGGAAGGAGACTGGGATTCTAGTTTACGCAAGAGGAAGCTAGGAGGAGATGGAAAGAAGACTTCTTATTGGTTTGATGGTAATGATATCCAAGGTTACAGATTATATAGGGAAGTCAATGGAATCTCAAAGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAGATGAATTTCAGAGTGTCGCTAGAGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAACTGGGCAGATGATTGAGACAGAAGCTATACCCGTTGTTGAGAAATATCATAAAAAGAGAGAAAGGGCCATAAAAAAGAAAATGAAGGAAGAGATGGTCGTTAATGTCAATTTCTCGCGTCCTCTCCGAACTACTCGTTCTTGTCGTAACCACATGCCTGCTACTTACACCTTTGACGAGTATGACAAGATGATCAGTGATGCCGTGGAAGAAACAGAGGACACCGATGGAGATGAGGTAGAAGGAAGGGATCAACAAAGTGCCTCATTGGACTCAAACGATAAGTCAACAGAGGTTGAAGCAGCTGAAATCCACAATGACGATGATAAAGAGAATGAGATAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTTGGTGCCAAAAACAGGTTGAGACAAAGAGTTACCAGGAACTCAGCCATCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

405

Amino Acids

45.97

Weight (kDa)

5.06

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1166
AccII	CGCG	1 cut(s)	907
AciI	CCGC	3 cut(s)	13, 131, 463
AclWI	GGATC	2 cut(s)	350, 1047
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	399, 734
AcuI	CTGAAG	3 cut(s)	249, 488, 735
AdeI	CACNNNGTG	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	1176
AgeI	ACCGGT	1 cut(s)	307
AgsI	TTSAA	7 cut(s)	184, 217, 295, 478, 503, 530, 1088
AhdI	GACNNNNNGTC	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	1196
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	9 cut(s)	227, 277, 368, 493, 580, 705, 773, 815, 1094
AluI	AGCT	9 cut(s)	227, 277, 368, 493, 580, 705, 773, 815, 1094
Alw26I	GTCTC	4 cut(s)	208, 543, 800, 1177
AlwI	GGATC	2 cut(s)	350, 1047
AoxI	GGCC	2 cut(s)	377, 855
ApeKI	GCWGC	2 cut(s)	785, 1091
ApoI	RAATTY	2 cut(s)	399, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	1058, 1090
AsiGI	ACCGGT	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	194, 855
AsuHPI	GGTGA	4 cut(s)	25, 145, 322, 407
AvaII	GGWCC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	1166
BbsI	GAAGAC	2 cut(s)	84, 605
BbvI	GCAGC	2 cut(s)	772, 1103
BccI	CCATC	7 cut(s)	19, 235, 584, 611, 877, 1010, 1217
BceAI	ACGGC	1 cut(s)	977
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	1 cut(s)	1198
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	981
BcoDI	GTCTC	4 cut(s)	208, 543, 800, 1177
BfaI	CTAG	5 cut(s)	365, 561, 581, 728, 750
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	786, 1092
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	2 cut(s)	787, 1093
Bme1390I	CCNGG	1 cut(s)	1198
Bme18I	GGWCC	1 cut(s)	194
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	194, 855
BmiI	GGNNCC	1 cut(s)	1168
BmrFI	CCNGG	1 cut(s)	1198
BmrI	ACTGGG	2 cut(s)	562, 801
BmsI	GCATC	3 cut(s)	319, 502, 979
BmuI	ACTGGG	2 cut(s)	562, 801
BpiI	GAAGAC	2 cut(s)	84, 605
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	6 cut(s)	371, 380, 442, 540, 631, 993
BsaWI	WCCGGW	3 cut(s)	35, 43, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	1011, 1041
Bsc4I	CCNNNNNNNGG	1 cut(s)	1176
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	557, 796
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	1198
BseDI	CCNNGG	6 cut(s)	371, 380, 442, 540, 631, 993
BseLI	CCNNNNNNNGG	1 cut(s)	1176
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	287, 699, 1218
BseNI	ACTGG	2 cut(s)	557, 796
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	772, 1103
BseYI	CCCAGC	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	907
BshFI	GGCC	2 cut(s)	379, 857
BshNI	GGYRCC	1 cut(s)	1166
BshTI	ACCGGT	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	36, 44, 308
BslI	CCNNNNNNNGG	1 cut(s)	1176
BsmAI	GTCTC	4 cut(s)	208, 543, 800, 1177
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	379, 857
Bsp143I	GATC	3 cut(s)	342, 981, 1039
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	2 cut(s)	371, 380
BspACI	CCGC	3 cut(s)	13, 131, 463
BspANI	GGCC	2 cut(s)	379, 857
BspCNI	CTCAG	3 cut(s)	286, 698, 1217
BspFNI	CGCG	1 cut(s)	907
BspLI	GGNNCC	1 cut(s)	1168
BspPI	GGATC	2 cut(s)	350, 1047
BspT107I	GGYRCC	1 cut(s)	1166
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	557, 796
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	6 cut(s)	371, 380, 442, 540, 631, 993
BssMI	GATC	3 cut(s)	342, 981, 1039
BssT1I	CCWWGG	5 cut(s)	371, 380, 442, 540, 631
Bst2UI	CCWGG	1 cut(s)	1198
Bst4CI	ACNGT	2 cut(s)	349, 412
Bst6I	CTCTTC	2 cut(s)	873, 1152
BstC8I	GCNNGC	2 cut(s)	682, 948
BstDEI	CTNAG	4 cut(s)	273, 390, 685, 1204
BstDSI	CCRYGG	3 cut(s)	371, 380, 993
BstEII	GGTNACC	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	907
BstKTI	GATC	3 cut(s)	345, 984, 1042
BstMAI	GTCTC	4 cut(s)	208, 543, 800, 1177
BstMBI	GATC	3 cut(s)	342, 981, 1039
BstNI	CCWGG	1 cut(s)	1198
BstNSI	RCATGY	1 cut(s)	946
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	1196
BstUI	CGCG	1 cut(s)	907
BstV1I	GCAGC	2 cut(s)	772, 1103
BstV2I	GAAGAC	2 cut(s)	84, 605
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	379, 857
BtgI	CCRYGG	3 cut(s)	371, 380, 993
BtsIMutI	CAGTG	1 cut(s)	991
Cac8I	GCNNGC	2 cut(s)	682, 948
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	194, 855
CseI	GACGC	2 cut(s)	896, 1151
CspAI	ACCGGT	1 cut(s)	307
CviAII	CATG	4 cut(s)	339, 372, 381, 943
DdeI	CTNAG	4 cut(s)	273, 390, 685, 1204
DpnI	GATC	3 cut(s)	344, 983, 1041
DpnII	GATC	3 cut(s)	342, 981, 1039
DraIII	CACNNNGTG	1 cut(s)	488
DriI	GACNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	873, 1152
Eam1105I	GACNNNNNGTC	1 cut(s)	200
EarI	CTCTTC	2 cut(s)	873, 1152
Eco130I	CCWWGG	5 cut(s)	371, 380, 442, 540, 631
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	249, 488, 735
Eco91I	GGTNACC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	1196
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	5 cut(s)	371, 380, 442, 540, 631
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	5 cut(s)	371, 380, 442, 540, 631
FaeI	CATG	4 cut(s)	342, 375, 384, 946
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FatI	CATG	4 cut(s)	338, 371, 380, 942
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	2 cut(s)	786, 1092
Fsp4HI	GCNGC	2 cut(s)	786, 1092
FspBI	CTAG	5 cut(s)	365, 561, 581, 728, 750
GluI	GCNGC	2 cut(s)	786, 1092
GsaI	CCCAGC	1 cut(s)	709
HaeIII	GGCC	2 cut(s)	379, 857
HapII	CCGG	3 cut(s)	36, 44, 308
HgaI	GACGC	2 cut(s)	896, 1151
Hin1II	CATG	4 cut(s)	342, 375, 384, 946
HincII	GTYRAC	2 cut(s)	415, 1077
HindII	GTYRAC	2 cut(s)	415, 1077
HindIII	AAGCTT	1 cut(s)	771
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	36, 44, 308
HphI	GGTGA	4 cut(s)	25, 145, 322, 407
Hpy166II	GTNNAC	5 cut(s)	149, 222, 415, 566, 1077
Hpy188I	TCNGA	8 cut(s)	100, 106, 124, 208, 436, 688, 741, 917
Hpy188III	TCNNGA	2 cut(s)	530, 728
Hpy8I	GTNNAC	5 cut(s)	149, 222, 415, 566, 1077
HpyAV	CCTTC	7 cut(s)	49, 289, 472, 539, 868, 1025, 1029
HpyCH4III	ACNGT	2 cut(s)	349, 412
HpyCH4IV	ACGT	2 cut(s)	151, 517
HpyCH4V	TGCA	5 cut(s)	287, 332, 338, 515, 788
HpyF3I	CTNAG	4 cut(s)	273, 390, 685, 1204
HpySE526I	ACGT	2 cut(s)	151, 517
Hsp92II	CATG	4 cut(s)	342, 375, 384, 946
Ksp22I	TGATCA	1 cut(s)	981
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	342, 981, 1039
LmnI	GCTCC	2 cut(s)	15, 373
Lsp1109I	GCAGC	2 cut(s)	772, 1103
LweI	GCATC	3 cut(s)	319, 502, 979
MaeI	CTAG	5 cut(s)	365, 561, 581, 728, 750
MaeII	ACGT	2 cut(s)	151, 517
MaeIII	GTNAC	5 cut(s)	4, 31, 635, 935, 1192
MalI	GATC	3 cut(s)	344, 983, 1041
MboI	GATC	3 cut(s)	342, 981, 1039
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	6 cut(s)	175, 212, 234, 399, 734, 898
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	4 cut(s)	63, 263, 446, 1055
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	379
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	5 cut(s)	83, 414, 459, 891, 1216
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	379
MspA1I	CMGCKG	2 cut(s)	227, 1094
MspI	CCGG	3 cut(s)	36, 44, 308
MspR9I	CCNGG	1 cut(s)	1198
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	1198
MvnI	CGCG	1 cut(s)	907
NcoI	CCATGG	2 cut(s)	371, 380
NdeII	GATC	3 cut(s)	342, 981, 1039
NlaIII	CATG	4 cut(s)	342, 375, 384, 946
NlaIV	GGNNCC	1 cut(s)	1168
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	946
OliI	CACNNNNGTG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	931
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	6 cut(s)	88, 101, 113, 125, 557, 663
PinAI	ACCGGT	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	787, 1093
PleI	GAGTC	4 cut(s)	63, 262, 446, 1055
PpsI	GAGTC	4 cut(s)	63, 262, 446, 1055
Psp6I	CCWGG	1 cut(s)	1196
PspEI	GGTNACC	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	1196
PspN4I	GGNNCC	1 cut(s)	1168
PspPI	GGNCC	2 cut(s)	194, 855
PvuII	CAGCTG	2 cut(s)	227, 1094
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	83, 414, 459, 891, 1216
SatI	GCNGC	2 cut(s)	786, 1092
Sau3AI	GATC	3 cut(s)	342, 981, 1039
Sau96I	GGNCC	2 cut(s)	194, 855
SchI	GAGTC	4 cut(s)	63, 263, 446, 1055
ScrFI	CCNGG	1 cut(s)	1198
SfaNI	GCATC	3 cut(s)	319, 502, 979
SgrAI	CRCCGGYG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	6 cut(s)	175, 212, 234, 399, 734, 898
SsiI	CCGC	3 cut(s)	13, 131, 463
SspMI	CTAG	5 cut(s)	365, 561, 581, 728, 750
StyD4I	CCNGG	1 cut(s)	1196
StyI	CCWWGG	5 cut(s)	371, 380, 442, 540, 631
TaaI	ACNGT	2 cut(s)	349, 412
TaiI	ACGT	2 cut(s)	154, 520
TaqI	TCGA	2 cut(s)	252, 496
TasI	AATT	6 cut(s)	175, 212, 234, 399, 734, 898
TfiI	GAWTC	6 cut(s)	88, 101, 113, 125, 557, 663
Tru1I	TTAA	5 cut(s)	83, 414, 459, 891, 1216
Tru9I	TTAA	5 cut(s)	83, 414, 459, 891, 1216
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	785, 1091
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	392, 747, 887
TspRI	CASTG	1 cut(s)	991
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	399, 734
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XspI	CTAG	5 cut(s)	365, 561, 581, 728, 750
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.