Rroxscaffold_6G00414860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002118
Physical Location & Seq
Reverse (-)
37127357 .. 37131830
4474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414860.1

Sequence Viewer

Length: 1140 bp
ATGAAGAGGCCGTCCCGCGATACAAGGATCGGAAGACGTCTTGTACAGATCCACCTGCCCGATTTGGCTTCAACTTCGGCTGTTGCGGGGCCTCCGTTCGATTCTCTCCCTCATCCACCTCGGCTGTTGCGGGGCCGCCGAACTCGGGGTTGGAGAGTCTATCACTCGTCCCGCAACCCGTCTCCGCCTCTCTCGCTCTCCCGGTCTCGAGTTCCGCCTCCGGGCTTGAGGTATCTCACTATCTCCCTCTCCCTCTCCGTCTCCTACTCTTCTCCTCCTCGACTTCCTCGGCGAGTCGGCGACGGCTCCTCCCCTCCTCCGGGTGATTGGAACACTGCATTGTATTCTAAGCGGATCAAAAGTGAAACGAAACTGAAAAGCATTGGAGTTTCAAGCTCTTTTAAGATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAACACCGGAACATCGTGACTCTTAATGGACATAACTGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCATGTTGCTCCTACAGGCAAGTTGATCATGTTCATGGAATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGATTGTGGACCTTCTTTGTCAACCGTACTTCTCGGACGGGGCTCAAGTACCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGATGATGCATTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGCAAAGTTGCGGGAGAACGTGATGCTGCTAAGACTATTGAGCGATGCTATTCCTGCTCTTGAGAAACTTCATAAGGCTGTTGTTGATGCGAAAGTAAAGGTTGTTGTTGATGCAACTTCTGCTGGCATCTTCATTGTCATCATAAAGTGTGTTCTTCAAGACTTGGTTGGTTTCAACATTTTACTAAATTTTGTTAGAAAACTAGTTCTGTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

379

Amino Acids

41.94

Weight (kDa)

9.72

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 63
AatII GACGTC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 63
AccII CGCG 1 cut(s) 18
AclWI GGATC 4 cut(s) 35, 43, 362, 590
AcsI RAATTY 2 cut(s) 843, 1108
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 3 cut(s) 45, 711, 733
AfiI CCNNNNNNNGG 5 cut(s) 145, 221, 319, 320, 741
AgsI TTSAA 8 cut(s) 72, 393, 437, 497, 647, 668, 1079, 1096
AhlI ACTAGT 1 cut(s) 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 3 cut(s) 396, 578, 761
AluI AGCT 3 cut(s) 396, 578, 761
Alw26I GTCTC 4 cut(s) 186, 210, 265, 870
AlwI GGATC 4 cut(s) 35, 43, 362, 590
Ama87I CYCGRG 2 cut(s) 144, 207
AoxI GGCC 4 cut(s) 8, 89, 133, 674
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 2 cut(s) 843, 1108
AseI ATTAAT 2 cut(s) 641, 816
AspS9I GGNCC 4 cut(s) 89, 133, 674, 692
AsuC2I CCSGG 3 cut(s) 202, 222, 321
AsuHPI GGTGA 1 cut(s) 335
AsuNHI GCTAGC 1 cut(s) 578
AvaI CYCGRG 2 cut(s) 144, 207
AvaII GGWCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 933
BccI CCATC 1 cut(s) 899
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BclI TGATCA 1 cut(s) 624
BcnI CCSGG 3 cut(s) 202, 222, 321
BcoDI GTCTC 4 cut(s) 186, 210, 265, 870
BcuI ACTAGT 1 cut(s) 1123
BfaI CTAG 3 cut(s) 557, 579, 1124
BfmI CTRYAG 2 cut(s) 612, 756
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 2 cut(s) 136, 947
BlsI GCNGC 2 cut(s) 137, 948
Bme1390I CCNGG 3 cut(s) 202, 222, 321
Bme18I GGWCC 1 cut(s) 692
BmeT110I CYCGRG 2 cut(s) 144, 207
BmgT120I GGNCC 4 cut(s) 89, 133, 674, 692
BmiI GGNNCC 3 cut(s) 90, 134, 307
BmrFI CCNGG 3 cut(s) 202, 222, 321
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 7 cut(s) 790, 811, 933, 955, 997, 1021, 1056
BmtI GCTAGC 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 40
BpuEI CTTGAG 3 cut(s) 247, 712, 1001
BpuMI CCSGG 3 cut(s) 202, 222, 321
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 119, 287, 420, 651
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 221, 319, 320, 741
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 2 cut(s) 447, 507
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 4 cut(s) 119, 287, 420, 651
BseGI GGATG 3 cut(s) 112, 661, 775
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 5 cut(s) 145, 221, 319, 320, 741
BseMI GCAATG 2 cut(s) 447, 507
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 5 cut(s) 264, 267, 298, 306, 888
BseXI GCAGC 1 cut(s) 933
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 4 cut(s) 10, 91, 135, 676
BsiHKCI CYCGRG 2 cut(s) 144, 207
BsiSI CCGG 4 cut(s) 202, 221, 320, 520
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 5 cut(s) 145, 221, 319, 320, 741
BsmAI GTCTC 4 cut(s) 186, 210, 265, 870
BsmBI CGTCTC 3 cut(s) 186, 265, 870
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 4 cut(s) 10, 91, 135, 676
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 2 cut(s) 144, 207
Bsp1286I GDGCHC 1 cut(s) 728
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 6 cut(s) 27, 48, 354, 472, 595, 624
Bsp19I CCATGG 1 cut(s) 420
BspANI GGCC 4 cut(s) 10, 91, 135, 676
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 90, 134, 307
BspMI ACCTGC 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 4 cut(s) 35, 43, 362, 590
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 447, 507
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 4 cut(s) 119, 287, 420, 651
BssMI GATC 6 cut(s) 27, 48, 354, 472, 595, 624
BssNI GRCGYC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 420, 651
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstAUI TGTACA 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 580, 1045
BstDEI CTNAG 2 cut(s) 348, 950
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 112, 661, 775
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 6 cut(s) 30, 51, 357, 475, 598, 627
BstMAI GTCTC 4 cut(s) 186, 210, 265, 870
BstMBI GATC 6 cut(s) 27, 48, 354, 472, 595, 624
BstMWI GCNNNNNNNGC 4 cut(s) 193, 575, 974, 1040
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 3 cut(s) 200, 220, 319
BstSFI CTRYAG 2 cut(s) 612, 756
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 933
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 4 cut(s) 10, 91, 135, 676
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 978
BtsCI GGATG 3 cut(s) 112, 661, 775
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 580, 1045
Cfr13I GGNCC 4 cut(s) 89, 133, 674, 692
Csp6I GTAC 3 cut(s) 44, 710, 732
CviAII CATG 4 cut(s) 421, 602, 628, 634
CviQI GTAC 3 cut(s) 44, 710, 732
DdeI CTNAG 2 cut(s) 348, 950
DpnI GATC 6 cut(s) 29, 50, 356, 474, 597, 626
DpnII GATC 6 cut(s) 27, 48, 354, 472, 595, 624
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
EciI GGCGGA 2 cut(s) 174, 204
Eco130I CCWWGG 2 cut(s) 420, 651
Eco24I GRGCYC 1 cut(s) 728
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 692
Eco88I CYCGRG 2 cut(s) 144, 207
EcoO109I RGGNCCY 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 420, 651
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 728
ErhI CCWWGG 2 cut(s) 420, 651
Esp3I CGTCTC 3 cut(s) 186, 265, 870
FaeI CATG 4 cut(s) 424, 605, 631, 637
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 420, 601, 627, 633
FauI CCCGC 5 cut(s) 23, 79, 123, 179, 924
FbaI TGATCA 1 cut(s) 624
Fnu4HI GCNGC 2 cut(s) 136, 947
FokI GGATG 3 cut(s) 99, 668, 782
FriOI GRGCYC 1 cut(s) 728
Fsp4HI GCNGC 2 cut(s) 136, 947
FspBI CTAG 3 cut(s) 557, 579, 1124
GluI GCNGC 2 cut(s) 136, 947
HaeIII GGCC 4 cut(s) 10, 91, 135, 676
HapII CCGG 4 cut(s) 202, 221, 320, 520
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 4 cut(s) 424, 605, 631, 637
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 5 cut(s) 101, 156, 294, 425, 532
HpaII CCGG 4 cut(s) 202, 221, 320, 520
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 692, 705
Hpy188I TCNGA 3 cut(s) 32, 719, 828
Hpy188III TCNNGA 5 cut(s) 207, 529, 557, 980, 1079
Hpy8I GTNNAC 2 cut(s) 692, 705
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 443, 705
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 2 cut(s) 37, 939
HpyCH4V TGCA 5 cut(s) 338, 464, 778, 803, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 575, 974, 1040
HpyF3I CTNAG 2 cut(s) 348, 950
HpySE526I ACGT 2 cut(s) 37, 939
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 4 cut(s) 424, 605, 631, 637
Ksp22I TGATCA 1 cut(s) 624
Kzo9I GATC 6 cut(s) 27, 48, 354, 472, 595, 624
LmnI GCTCC 2 cut(s) 311, 613
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 7 cut(s) 790, 811, 933, 955, 997, 1021, 1056
MaeI CTAG 3 cut(s) 557, 579, 1124
MaeII ACGT 2 cut(s) 37, 939
MaeIII GTNAC 1 cut(s) 529
MalI GATC 6 cut(s) 29, 50, 356, 474, 597, 626
MboI GATC 6 cut(s) 27, 48, 354, 472, 595, 624
MboII GAAGA 6 cut(s) 16, 45, 261, 840, 1042, 1067
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 6 cut(s) 412, 583, 638, 642, 843, 1108
MlyI GAGTC 3 cut(s) 165, 303, 526
MmeI TCCRAC 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 805
MseI TTAA 6 cut(s) 402, 411, 537, 641, 791, 816
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 4 cut(s) 202, 221, 320, 520
MspR9I CCNGG 3 cut(s) 202, 222, 321
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 193, 575, 974, 1040
NciI CCSGG 3 cut(s) 202, 222, 321
NcoI CCATGG 1 cut(s) 420
NdeII GATC 6 cut(s) 27, 48, 354, 472, 595, 624
NheI GCTAGC 1 cut(s) 578
NlaIII CATG 4 cut(s) 424, 605, 631, 637
NlaIV GGNNCC 3 cut(s) 90, 134, 307
NmeAIII GCCGAG 2 cut(s) 100, 268
NmuCI GTSAC 1 cut(s) 529
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 207
PaqCI CACCTGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 101, 425
PkrI GCNGC 2 cut(s) 137, 948
PleI GAGTC 3 cut(s) 164, 302, 526
PpsI GAGTC 3 cut(s) 164, 302, 526
PshBI ATTAAT 2 cut(s) 641, 816
PspN4I GGNNCC 3 cut(s) 90, 134, 307
PspPI GGNCC 4 cut(s) 89, 133, 674, 692
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 3 cut(s) 45, 711, 733
RsaNI GTAC 3 cut(s) 44, 710, 732
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 6 cut(s) 402, 411, 537, 641, 791, 816
SatI GCNGC 2 cut(s) 136, 947
Sau3AI GATC 6 cut(s) 27, 48, 354, 472, 595, 624
Sau96I GGNCC 4 cut(s) 89, 133, 674, 692
SchI GAGTC 3 cut(s) 165, 303, 526
ScrFI CCNGG 3 cut(s) 202, 222, 321
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 7 cut(s) 790, 811, 933, 955, 997, 1021, 1056
SfcI CTRYAG 2 cut(s) 612, 756
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 692
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 207, 226, 727, 980
SmoI CTYRAG 4 cut(s) 207, 226, 727, 980
SpeI ACTAGT 1 cut(s) 1123
Sse9I AATT 6 cut(s) 412, 583, 638, 642, 843, 1108
SspMI CTAG 3 cut(s) 557, 579, 1124
StyD4I CCNGG 3 cut(s) 200, 220, 319
StyI CCWWGG 2 cut(s) 420, 651
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 2 cut(s) 40, 942
TaqI TCGA 5 cut(s) 99, 208, 280, 475, 591
TasI AATT 6 cut(s) 412, 583, 638, 642, 843, 1108
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 2 cut(s) 101, 425
Tru1I TTAA 6 cut(s) 402, 411, 537, 641, 791, 816
Tru9I TTAA 6 cut(s) 402, 411, 537, 641, 791, 816
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 6 cut(s) 17, 417, 622, 840, 980, 1042
TspGWI ACGGA 2 cut(s) 84, 247
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 692
VspI ATTAAT 2 cut(s) 641, 816
XapI RAATTY 2 cut(s) 843, 1108
XbaI TCTAGA 1 cut(s) 556
XceI RCATGY 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 207
XspI CTAG 3 cut(s) 557, 579, 1124
ZraI GACGTC 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.