RLG00000022980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002118
Physical Location & Seq
Forward (+)
16215262 .. 16217583
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022980

Sequence Viewer

Length: 315 bp
ATGCTTGCCGGCACCGATCTCGGAGAAGATGGTGTTGAAGGCGTCGTGGCTCTGCATCTGGCAAACCATAATTATAATACCACATACGTTCAGCCCAGTAACATTGTTTACCCAAACTTAAATGAAGCAAGGGGAATACCAGCAGCAAGTAAAACATTGGATAGTTCTGATGCATGTGTGACTGTTCTTTGTATTAAACTTGCTACGTGGTGGCCATGGGATGAACTCTCATTAAGCAAAGTTGCTGGAGAACGTGATGCTGCTAAGACTATTGAAACTAATGCGATTCCTACTCTTCAGAAACTTCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

105

Amino Acids

11.24

Weight (kDa)

4.94

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 281, 290
AcyI GRCGYC 1 cut(s) 42
AgsI TTSAA 2 cut(s) 38, 275
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 143, 260
BalI TGGCCA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 155, 247
BccI CCATC 1 cut(s) 23
BcgI CGANNNNNNTGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 144, 261
BlsI GCNGC 2 cut(s) 145, 262
BmiI GGNNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 90
BmsI GCATC 3 cut(s) 64, 160, 247
BmuI ACTGGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 155, 247
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 9
BsnI GGCC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 215
BspANI GGCC 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 6, 10
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 155, 247
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 6, 10
Cfr10I RCCGGY 1 cut(s) 8
CseI GACGC 1 cut(s) 31
CviAII CATG 2 cut(s) 174, 216
CviJI RGCY 3 cut(s) 50, 94, 214
CviKI_1 RGCY 3 cut(s) 50, 94, 214
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 281, 290
EcoT14I CCWWGG 1 cut(s) 215
EcoT22I ATGCAT 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 177, 219
FaiI YATR 5 cut(s) 69, 75, 85, 175, 217
FatI CATG 2 cut(s) 173, 215
Fnu4HI GCNGC 2 cut(s) 144, 261
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 144, 261
GluI GCNGC 2 cut(s) 144, 261
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 177, 219
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 23, 169, 300, 309
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 3 cut(s) 87, 206, 253
HpyCH4V TGCA 2 cut(s) 55, 173
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 3 cut(s) 87, 206, 253
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 177, 219
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 5 cut(s) 22, 44, 109, 153, 231
Lsp1109I GCAGC 2 cut(s) 155, 247
LweI GCATC 3 cut(s) 64, 160, 247
MaeII ACGT 3 cut(s) 87, 206, 253
MaeIII GTNAC 2 cut(s) 98, 178
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 38, 287
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 1 cut(s) 70
MluNI TGGCCA 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 214
Mph1103I ATGCAT 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 214
MseI TTAA 3 cut(s) 119, 195, 233
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 1 cut(s) 9
NaeI GCCGGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 215
NdeII GATC 1 cut(s) 16
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 177, 219
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 145, 262
Ppu21I YACGTR 1 cut(s) 207
PsiI TTATAA 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 119, 195, 233
SatI GCNGC 2 cut(s) 144, 261
Sau3AI GATC 1 cut(s) 16
SetI ASST 3 cut(s) 90, 209, 256
SfaNI GCATC 3 cut(s) 64, 160, 247
Sse9I AATT 1 cut(s) 70
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 3 cut(s) 90, 209, 256
TasI AATT 1 cut(s) 70
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 3 cut(s) 119, 195, 233
Tru9I TTAA 3 cut(s) 119, 195, 233
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 143, 260
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 138, 237
XceI RCATGY 1 cut(s) 177
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.