Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Reverse (-)

1819126 .. 1828367

Gene Structure 9242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAGAATATCGAGAACCATCGTGCGAAGGTAGCTGCTGACTTTGATAGGGAAACCGCGAAGACAGACCAGCTTATACGCGAACTAGACCAGCGCATTGCCCAACGAACATTCGGTAAGAAGAAGTCAAAGGCCAATTCGGAACCTTCGGAGGAGATTCAATTGAAGGAAGAAAGGAGAAGAAAATGCACAAACGGACAAAAAAATAGGTCAACGCCGGATTCCGGACTTTTCTGGCCGAGTTGGCTGGCCAAGAACATGGGTTGGGTTCGTGATAGGGAAGCTCATCTCTACCCTTGGTGGATTTCAATTTCGATACACTTGAGGTTGAAAAAACAACTCATGAGACTTGATCCGACAGAGCGTTTACTAATATTAAAAGCACTCTGTGAACTCCGAGCCGATCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGATGAACTCTCATCAAGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCAGAAGCCATCTAACTATAATACTATAAGGACTAAAAGAACGAGAAAGTCATTGTCCAGCAAAACAACAAACAACATTTTTTGGTATTGTCTGATCCATGTATCAGACGGCATTGAGATAGACAACAGCAAAAGTGAAGATGAAGCTGAAGAAGAGGAGAACGACGTCTTCGCGCTAGAGTTGACAGGTAGGAAGAATTCAACCCTCAAGCAGTTAAAGATATCTAAGGAGCCTGTCAAGCTCAAGTCTATGGCATTCACCAAACCTGAATTCGCCACATATACAAATGAGGCCAATAAGGCACATGAGATTCTGGATGAGATGATCGCCGCGAAGATGGTGAAAACAGACTTTGGCCCTTTCCCTCGACCGGATCAGCTGAAAGGGAAGAAATACTACAAATTCCACAACTTGTGGAACCATAACACAGCTGATTGTGTGAAGCTAAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

404

Amino Acids

46.74

Weight (kDa)

9.03

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	927
AccII	CGCG	4 cut(s)	59, 81, 932, 1091
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	3 cut(s)	57, 469, 1089
AclWI	GGATC	3 cut(s)	347, 847, 1140
AcoI	YGGCCR	2 cut(s)	236, 249
AcsI	RAATTY	5 cut(s)	456, 656, 955, 1028, 1160
AcuI	CTGAAG	2 cut(s)	743, 927
AcyI	GRCGYC	1 cut(s)	924
AdeI	CACNNNGTG	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	224, 1129
AgsI	TTSAA	7 cut(s)	161, 166, 309, 331, 604, 728, 960
AjuI	GAANNNNNNNTTGG	2 cut(s)	1013, 1045
AluBI	AGCT	8 cut(s)	35, 73, 284, 905, 1000, 1138, 1190, 1204
AluI	AGCT	8 cut(s)	35, 73, 284, 905, 1000, 1138, 1190, 1204
Alw26I	GTCTC	2 cut(s)	340, 483
AlwI	GGATC	3 cut(s)	347, 847, 1140
Ama87I	CYCGRG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	5 cut(s)	132, 236, 249, 1050, 1114
ApeKI	GCWGC	2 cut(s)	35, 713
ApoI	RAATTY	5 cut(s)	456, 656, 955, 1028, 1160
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	2 cut(s)	96, 934
AspS9I	GGNCC	1 cut(s)	1115
AsuHPI	GGTGA	2 cut(s)	1009, 1111
AvaI	CYCGRG	1 cut(s)	650
BalI	TGGCCA	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	1139, 1171
BbsI	GAAGAC	3 cut(s)	68, 581, 919
BbvI	GCAGC	2 cut(s)	22, 700
BccI	CCATC	4 cut(s)	27, 512, 775, 1090
BceAI	ACGGC	1 cut(s)	883
BcoDI	GTCTC	2 cut(s)	340, 483
BfaI	CTAG	3 cut(s)	86, 638, 935
BglI	GCCNNNNNGGC	2 cut(s)	244, 1058
BisI	GCNGC	3 cut(s)	36, 714, 1089
BlsI	GCNGC	3 cut(s)	37, 715, 1090
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	1115
BmiI	GGNNCC	3 cut(s)	144, 990, 1178
BmsI	GCATC	4 cut(s)	403, 424, 700, 724
BpiI	GAAGAC	3 cut(s)	68, 581, 919
BpuEI	CTTGAG	4 cut(s)	343, 770, 950, 986
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	2 cut(s)	224, 1129
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 1129
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	96
BseAI	TCCGGA	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	679, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	224, 1129
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	3 cut(s)	167, 501, 929
BseXI	GCAGC	2 cut(s)	22, 700
Bsh1236I	CGCG	4 cut(s)	59, 81, 932, 1091
Bsh1285I	CGRYCG	1 cut(s)	1130
BshFI	GGCC	5 cut(s)	134, 238, 251, 1052, 1116
BsiEI	CGRYCG	1 cut(s)	1130
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	3 cut(s)	218, 225, 1130
BslI	CCNNNNNNNGG	2 cut(s)	224, 1129
BsmAI	GTCTC	2 cut(s)	340, 483
BsmBI	CGTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	1013
BsnI	GGCC	5 cut(s)	134, 238, 251, 1052, 1116
BsoBI	CYCGRG	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	5 cut(s)	352, 403, 852, 1083, 1132
BspACI	CCGC	3 cut(s)	57, 469, 1089
BspANI	GGCC	5 cut(s)	134, 238, 251, 1052, 1116
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	4 cut(s)	59, 81, 932, 1091
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	144, 990, 1178
BspPI	GGATC	3 cut(s)	347, 847, 1140
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	5 cut(s)	352, 403, 852, 1083, 1132
BssNI	GRCGYC	1 cut(s)	924
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	1 cut(s)	924
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	717, 984
BstF5I	GGATG	2 cut(s)	679, 1081
BstFNI	CGCG	4 cut(s)	59, 81, 932, 1091
BstHHI	GCGC	2 cut(s)	96, 934
BstKTI	GATC	5 cut(s)	355, 406, 855, 1086, 1135
BstMAI	GTCTC	2 cut(s)	340, 483
BstMBI	GATC	5 cut(s)	352, 403, 852, 1083, 1132
BstMCI	CGRYCG	1 cut(s)	1130
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 244, 743, 997, 1058
BstUI	CGCG	4 cut(s)	59, 81, 932, 1091
BstV1I	GCAGC	2 cut(s)	22, 700
BstV2I	GAAGAC	3 cut(s)	68, 581, 919
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	5 cut(s)	134, 238, 251, 1052, 1116
BtsCI	GGATG	2 cut(s)	679, 1081
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	423, 632
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	2 cut(s)	96, 934
Cfr13I	GGNCC	1 cut(s)	1115
CviAII	CATG	4 cut(s)	259, 343, 857, 1064
DdeI	CTNAG	2 cut(s)	717, 984
DpnI	GATC	5 cut(s)	354, 405, 854, 1085, 1134
DpnII	GATC	5 cut(s)	352, 403, 852, 1083, 1132
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	2 cut(s)	236, 249
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
Eco130I	CCWWGG	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	981
Eco57I	CTGAAG	2 cut(s)	743, 927
Eco88I	CYCGRG	1 cut(s)	650
EcoRI	GAATTC	2 cut(s)	955, 1028
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	4 cut(s)	262, 346, 860, 1067
FatI	CATG	4 cut(s)	258, 342, 856, 1063
Fnu4HI	GCNGC	3 cut(s)	36, 714, 1089
FokI	GGATG	2 cut(s)	686, 1088
Fsp4HI	GCNGC	3 cut(s)	36, 714, 1089
FspBI	CTAG	3 cut(s)	86, 638, 935
GlaI	GCGC	2 cut(s)	95, 933
GluI	GCNGC	3 cut(s)	36, 714, 1089
HaeIII	GGCC	5 cut(s)	134, 238, 251, 1052, 1116
HapII	CCGG	3 cut(s)	218, 225, 1130
HhaI	GCGC	2 cut(s)	96, 934
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	4 cut(s)	262, 346, 860, 1067
Hin6I	GCGC	2 cut(s)	94, 932
HinP1I	GCGC	2 cut(s)	94, 932
HincII	GTYRAC	2 cut(s)	213, 942
HindII	GTYRAC	2 cut(s)	213, 942
HinfI	GANTC	4 cut(s)	157, 221, 569, 1069
HpaII	CCGG	3 cut(s)	218, 225, 1130
HphI	GGTGA	2 cut(s)	1009, 1111
Hpy166II	GTNNAC	4 cut(s)	213, 368, 392, 942
Hpy188I	TCNGA	9 cut(s)	142, 151, 357, 398, 441, 663, 762, 852, 865
Hpy188III	TCNNGA	8 cut(s)	13, 225, 272, 343, 407, 650, 749, 1073
Hpy8I	GTNNAC	4 cut(s)	213, 368, 392, 942
Hpy99I	CGWCG	1 cut(s)	926
HpyAV	CCTTC	3 cut(s)	22, 156, 160
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	2 cut(s)	706, 924
HpyCH4V	TGCA	3 cut(s)	189, 416, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 244, 743, 997, 1058
HpyF3I	CTNAG	2 cut(s)	717, 984
HpySE526I	ACGT	2 cut(s)	706, 924
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	4 cut(s)	262, 346, 860, 1067
HspAI	GCGC	2 cut(s)	94, 932
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	5 cut(s)	352, 403, 852, 1083, 1132
LmnI	GCTCC	1 cut(s)	988
Lsp1109I	GCAGC	2 cut(s)	22, 700
LweI	GCATC	4 cut(s)	403, 424, 700, 724
MaeI	CTAG	3 cut(s)	86, 638, 935
MaeII	ACGT	2 cut(s)	706, 924
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	5 cut(s)	354, 405, 854, 1085, 1134
MboI	GATC	5 cut(s)	352, 403, 852, 1083, 1132
MfeI	CAATTG	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	8 cut(s)	136, 161, 309, 456, 656, 955, 1028, 1160
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	145, 318, 479, 492, 646, 907, 974, 1042, 1134
Mox20I	TGGCCA	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	3 cut(s)	377, 429, 974
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	1138, 1190
MspI	CCGG	3 cut(s)	218, 225, 1130
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	1013
MvnI	CGCG	4 cut(s)	59, 81, 932, 1091
MwoI	GCNNNNNNNGC	5 cut(s)	32, 244, 743, 997, 1058
NdeII	GATC	5 cut(s)	352, 403, 852, 1083, 1132
NlaIII	CATG	4 cut(s)	262, 346, 860, 1067
NlaIV	GGNNCC	3 cut(s)	144, 990, 1178
NmeAIII	GCCGAG	1 cut(s)	264
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	342
PctI	GAATGC	1 cut(s)	1013
PfeI	GAWTC	3 cut(s)	157, 221, 1069
PkrI	GCNGC	3 cut(s)	37, 715, 1090
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PshBI	ATTAAT	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	144, 990, 1178
PspPI	GGNCC	1 cut(s)	1115
PvuII	CAGCTG	2 cut(s)	1138, 1190
SaqAI	TTAA	3 cut(s)	377, 429, 974
SatI	GCNGC	3 cut(s)	36, 714, 1089
Sau3AI	GATC	5 cut(s)	352, 403, 852, 1083, 1132
Sau96I	GGNCC	1 cut(s)	1115
SchI	GAGTC	1 cut(s)	578
SfaNI	GCATC	4 cut(s)	403, 424, 700, 724
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	5 cut(s)	322, 650, 749, 965, 1001
SmoI	CTYRAG	5 cut(s)	322, 650, 749, 965, 1001
Sse9I	AATT	8 cut(s)	136, 161, 309, 456, 656, 955, 1028, 1160
SsiI	CCGC	3 cut(s)	57, 469, 1089
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	3 cut(s)	86, 638, 935
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	2 cut(s)	709, 927
TaqI	TCGA	5 cut(s)	12, 314, 572, 651, 1126
TasI	AATT	8 cut(s)	136, 161, 309, 456, 656, 955, 1028, 1160
TauI	GCSGC	1 cut(s)	1091
TfiI	GAWTC	3 cut(s)	157, 221, 1069
Tru1I	TTAA	3 cut(s)	377, 429, 974
Tru9I	TTAA	3 cut(s)	377, 429, 974
TscAI	CASTG	2 cut(s)	423, 632
TseI	GCWGC	2 cut(s)	35, 713
TspDTI	ATGAA	3 cut(s)	453, 690, 915
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	2 cut(s)	423, 632
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	5 cut(s)	456, 656, 955, 1028, 1160
XhoI	CTCGAG	1 cut(s)	650
XspI	CTAG	3 cut(s)	86, 638, 935
ZraI	GACGTC	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.