Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Reverse (-)

67659010 .. 67664619

Gene Structure 5610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG484500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTCATTGCTACTTCCAGAGGCGGAGAAGGCCTTCAGGATCGACGATCAATCGGACAGCGTCGAGGACTCCGGCGAGGTAGCTTCGACAGAAGTTTAAGTTCTGCATTCTCGATGCAGTTCGACACCGGCGAGGGAATACCAGCAGCAAGTAAAACATTGGATAATTCTGATGCATGTGTGATTGTTCTTTGTATTAAACTTGCTACGTGGTGGCCATGGGATGAACTCTTATCAAGCAAAGTTGCTGGAGAACGTGATGCTATTAAGACTATTGAAACTGATGCTATTCATGCTCTTCAAAAACTTCAGAAGGCTTGTCAATTATACATTTGTAAGAGGAAAACTACTGAAGAGAGTGCAAGAAAGGAAGAGTATGTGAGACCTCAGAGCATGAAAACCCATCTCCAGATACTGATCGGGAAAAAGTCAGTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

9.41

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	215
AcuI	CTGAAG	3 cut(s)	20, 293, 372
AgsI	TTSAA	2 cut(s)	278, 302
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	2 cut(s)	31, 215
ApeKI	GCWGC	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	4 cut(s)	105, 163, 250, 274
BpmI	CTGGAG	2 cut(s)	270, 392
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	33, 217
BsiSI	CCGG	2 cut(s)	73, 129
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	33, 217
Bso31I	GGTCTC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	40, 47, 417
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	33, 217
BspCNI	CTCAG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	40, 47, 417
BssNAI	GTATAC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	218
Bst1107I	GTATAC	1 cut(s)	436
Bst6I	CTCTTC	3 cut(s)	303, 348, 366
BstBAI	YACGTR	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	43, 50, 420
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	3 cut(s)	40, 47, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 293
BstNSI	RCATGY	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	158
BstZ17I	GTATAC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	33, 217
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr10I	RCCGGY	1 cut(s)	128
CseI	GACGC	1 cut(s)	50
CviAII	CATG	4 cut(s)	177, 219, 293, 394
CviJI	RGCY	4 cut(s)	33, 84, 217, 317
CviKI_1	RGCY	4 cut(s)	33, 84, 217, 317
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	42, 49, 419
DpnII	GATC	3 cut(s)	40, 47, 417
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	3 cut(s)	303, 348, 366
EarI	CTCTTC	3 cut(s)	303, 348, 366
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	20, 293, 372
EcoT14I	CCWWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	4 cut(s)	180, 222, 296, 397
FaiI	YATR	7 cut(s)	178, 220, 294, 328, 378, 395, 436
FatI	CATG	4 cut(s)	176, 218, 292, 393
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	2 cut(s)	270, 392
HaeIII	GGCC	2 cut(s)	33, 217
HapII	CCGG	2 cut(s)	73, 129
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	180, 222, 296, 397
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	73, 129
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	56, 172, 312, 390
Hpy188III	TCNNGA	5 cut(s)	18, 38, 112, 409, 421
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	2 cut(s)	48, 66
HpyAV	CCTTC	3 cut(s)	23, 44, 307
HpyCH4IV	ACGT	2 cut(s)	209, 256
HpyCH4V	TGCA	4 cut(s)	107, 118, 176, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 293
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	2 cut(s)	209, 256
Hsp92II	CATG	4 cut(s)	180, 222, 296, 397
Kzo9I	GATC	3 cut(s)	40, 47, 417
LguI	GCTCTTC	1 cut(s)	303
LpnPI	CCDG	7 cut(s)	23, 31, 86, 142, 156, 234, 422
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	4 cut(s)	105, 163, 250, 274
MaeII	ACGT	2 cut(s)	209, 256
MalI	GATC	3 cut(s)	42, 49, 419
MboI	GATC	3 cut(s)	40, 47, 417
MboII	GAAGA	3 cut(s)	290, 365, 383
MlsI	TGGCCA	1 cut(s)	217
MluCI	AATT	2 cut(s)	166, 323
MluNI	TGGCCA	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	14, 59, 71, 127, 333, 396
Mox20I	TGGCCA	1 cut(s)	217
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	217
MseI	TTAA	3 cut(s)	98, 198, 267
Msp20I	TGGCCA	1 cut(s)	217
MspI	CCGG	2 cut(s)	73, 129
Mva1269I	GAATGC	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	30, 293
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	40, 47, 417
NlaIII	CATG	4 cut(s)	180, 222, 296, 397
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	415
PsyI	GACNNNGTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	98, 198, 267
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	40, 47, 417
SchI	GAGTC	1 cut(s)	63
SetI	ASST	5 cut(s)	82, 86, 212, 259, 388
SfaNI	GCATC	4 cut(s)	105, 163, 250, 274
SgrAI	CRCCGGYG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	166, 323
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	24
StuI	AGGCCT	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	218
TaiI	ACGT	2 cut(s)	212, 259
TaqI	TCGA	5 cut(s)	43, 64, 87, 113, 123
TasI	AATT	2 cut(s)	166, 323
Tru1I	TTAA	3 cut(s)	98, 198, 267
Tru9I	TTAA	3 cut(s)	98, 198, 267
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	240, 281, 410
Tth111I	GACNNNGTC	1 cut(s)	60
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.