Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

17655175 .. 17658513

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTGCTGATCAATTAATTGCTGAAACACCTCCAGTAGTCCCGAGGGACTCACTGGACACTCTGGAGTGTGCCATGTTGCCAACAACTAGAACGGCAAGAACAAGTATCAAAGTGTCTTTCCAGGGCAGCAGACTTTCAGACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGAATAGACTCAGAGGGCCAATGCTGGATGATTTGCATTTGAAGAAGTTGAAAGTCACTGAAGCTTATTGCACGGAAGTAGTAGCTGGTAATTCTGGAGGATTGTGCAGCCTTGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTACCGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATCATCAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

192

Amino Acids

21.11

Weight (kDa)

8.73

Isoelectric Point (pI)

18.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	446
AcuI	CTGAAG	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	277, 286
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	4 cut(s)	195, 299, 320, 484
AluI	AGCT	4 cut(s)	195, 299, 320, 484
Alw21I	GWGCWC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	222, 251
ApeKI	GCWGC	3 cut(s)	129, 342, 526
ApoI	RAATTY	1 cut(s)	446
AseI	ATTAAT	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	222, 251
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	3 cut(s)	141, 354, 538
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	2 cut(s)	90, 210
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	3 cut(s)	130, 343, 527
BlsI	GCNGC	3 cut(s)	131, 344, 528
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	222, 251
BmiI	GGNNCC	2 cut(s)	223, 381
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	507
BmtI	GCTAGC	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	147
BpmI	CTGGAG	4 cut(s)	18, 86, 181, 351
BsaJI	CCNNGG	2 cut(s)	44, 124
Bse1I	ACTGG	4 cut(s)	35, 60, 383, 523
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	44, 124
BseGI	GGATG	2 cut(s)	175, 268
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	4 cut(s)	35, 60, 383, 523
BseXI	GCAGC	3 cut(s)	141, 354, 538
BsgI	GTGCAG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	224, 253
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	26, 62
BsmFI	GGGAC	2 cut(s)	26, 62
BsnI	GGCC	2 cut(s)	224, 253
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	10, 451
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	224, 253
BspCNI	CTCAG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	223, 381
BspOI	GCTAGC	1 cut(s)	213
BsrI	ACTGG	4 cut(s)	35, 60, 383, 523
BssECI	CCNNGG	2 cut(s)	44, 124
BssMI	GATC	2 cut(s)	10, 451
BssNAI	GTATAC	1 cut(s)	471
Bst1107I	GTATAC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	175, 268
BstKTI	GATC	2 cut(s)	13, 454
BstMBI	GATC	2 cut(s)	10, 451
BstNI	CCWGG	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	141, 354, 538
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstZ17I	GTATAC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	224, 253
BtsCI	GGATG	2 cut(s)	175, 268
BtsIMutI	CAGTG	3 cut(s)	53, 291, 516
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	222, 251
CviAII	CATG	2 cut(s)	76, 476
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	2 cut(s)	12, 453
DpnII	GATC	2 cut(s)	10, 451
Ecl136II	GAGCTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	2 cut(s)	203, 550
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	123
EcoRV	GATATC	2 cut(s)	203, 550
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	2 cut(s)	79, 479
FaiI	YATR	5 cut(s)	77, 371, 409, 471, 477
FaqI	GGGAC	2 cut(s)	26, 62
FatI	CATG	2 cut(s)	75, 475
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	3 cut(s)	130, 343, 527
FokI	GGATG	2 cut(s)	182, 275
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	130, 343, 527
FspBI	CTAG	2 cut(s)	90, 210
GluI	GCNGC	3 cut(s)	130, 343, 527
GsuI	CTGGAG	4 cut(s)	18, 86, 181, 351
HaeIII	GGCC	2 cut(s)	224, 253
Hin1II	CATG	2 cut(s)	79, 479
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	50, 243
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	3 cut(s)	142, 248, 456
Hpy188III	TCNNGA	5 cut(s)	43, 65, 198, 330, 502
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	473
HpyCH4V	TGCA	6 cut(s)	231, 271, 306, 342, 362, 498
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	79, 479
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 451
LmnI	GCTCC	3 cut(s)	192, 200, 389
Lsp1109I	GCAGC	3 cut(s)	141, 354, 538
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	2 cut(s)	90, 210
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	12, 453
MboI	GATC	2 cut(s)	10, 451
MboII	GAAGA	2 cut(s)	289, 404
MfeI	CAATTG	2 cut(s)	153, 226
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	8 cut(s)	14, 18, 153, 226, 325, 446, 553, 571
MlyI	GAGTC	2 cut(s)	44, 237
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	7 cut(s)	39, 42, 182, 242, 326, 503, 538
MseI	TTAA	3 cut(s)	17, 420, 444
MspR9I	CCNGG	1 cut(s)	125
MunI	CAATTG	2 cut(s)	153, 226
MvaI	CCWGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	10, 451
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	79, 479
NlaIV	GGNNCC	2 cut(s)	223, 381
NmuCI	GTSAC	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	131, 344, 528
PleI	GAGTC	2 cut(s)	44, 237
PpsI	GAGTC	2 cut(s)	44, 237
PshAI	GACNNNNGTC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	223, 381
PspPI	GGNCC	2 cut(s)	222, 251
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	17, 420, 444
SatI	GCNGC	3 cut(s)	130, 343, 527
Sau3AI	GATC	2 cut(s)	10, 451
Sau96I	GGNCC	2 cut(s)	222, 251
SchI	GAGTC	2 cut(s)	44, 237
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	34, 197, 301, 322, 486, 514
SfaNI	GCATC	1 cut(s)	507
Sse9I	AATT	8 cut(s)	14, 18, 153, 226, 325, 446, 553, 571
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	90, 210
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	123
TasI	AATT	8 cut(s)	14, 18, 153, 226, 325, 446, 553, 571
Tru1I	TTAA	3 cut(s)	17, 420, 444
Tru9I	TTAA	3 cut(s)	17, 420, 444
TscAI	CASTG	3 cut(s)	60, 298, 523
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	129, 342, 526
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	404, 453, 553
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	3 cut(s)	60, 298, 523
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	2 cut(s)	90, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.