MD08G1131900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
12453297 .. 12457265
3969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1131900.v1.1.491

Sequence Viewer

Length: 1563 bp
ATGGCCGGGGGTCGCCGGAGACGGGCGGCGAACGACGTCGTCGAAGGAGAAACCCGATCGCCGAAGAAAGACGAACAAGTCGTGGTTTTGGACGAAGAGGAGGACGAAGATCCTCTGAAAGCCACGGTCGCGAGGCTTCGCGGACGATGGGAACTGGCCTCCGTCCTCAACTTCTTGATCGTTTTTGAGCCAGTGATTGGGAAGGCTGCTAGATTATCGGCTGAAGAAATCGAGATGGGTTTGATAAACCCGAACTCACTTGCTCAGCTTCACATTGCTCTGTTGAAGGGAATACCACCTGTAAGTAAAACATTGGATGGCTTGGAAGATGCGTGGGTGACTGTGCTTTGTAAGAAACTTGCTCCTTGGTGGCAATGGATTGCTGAAGGGGAAATTCCGCTACTGGCAGCTAAAGGAGAGGAGATATCCCATTACAAGGAACTTGATCCAACAAAACATTTACTACTCTTAAAAGCACTCTGTGAACTCCGAGCTAAACAAGATGATGTATTGGCTTATATTAATGTTAATCTGAAACAAGGAACTGAGGTTTCTTTCTTCCGCAAAGATAAGATGGGAGGAGATCGAAAAGGAACTACCTATTGGTATGAAGGAAATGCAACTGTTGGCCATAGGTTATACAAGGAAGTAATTGTCCTTGAGTCGAAGGCAAAAGCTAGGGGAAAAGGAAACCTGCCAAGTATTAGTTTTCAGTGGGAGACACTGGCAACCAATCTCAAGGAATTTCGTAAAGTTCTTGATGAATTCTCATCAAGCAAAGTTGCCGCCAAAGTTGCTATTGCTAGGACTATTGAATCCGATGTTATTCCTGCTCTTGAGAAACTTCAGCAGAAGAAAGAAAAGGAACTAAGAAAGAAACAAAGGCTAGAAAGGCAACTGAATGATTCGAGAAATTCTTATGCTGCTGGAACCATTCGTACCACTCGCACCCGTAGGGCTGTCAGCTACACATTTGATGAGTACGATCGGGCCATTCATGATGCTATAAAAGCAAATAAGAAAACTAGTGAAGAGAAAATGCAAGAAAACAAGCGTAGAAGAAGAAATGGTGCCTCAGAGGGAAACTCAGAAGATGGTTCGGACAAAAAAGGTGATTATATTAATGGCGACAACAATGATTCTGGCAAGAAGGATGAATCTGCAGGTAGTGACACTGCAAGCGACATGCTTGAAGAATTTTCTACTGATGACGATGATAAAAATTGGGGTGATCGTAGTGGCATGAAGGATGAAGACAACAGTGACCAGAGTGACTCTGGAAATTCTGAGACGGACAAGACCTGTGCTCAGACTGATGGTATTGCCCAAAAGCCAGTGGGCGTGCGCTGGAGTTCAAGACTAGCAGGAGACAGTAGCCATCTGGTCATGGACAACAGAAACTTGGTTACAAAGAATAGGTCCAGACAGAGACCTATCTGTAACTCTGCTCTTGATTCTGTTGTAATACCAGACTCCGATGATGAAAACTCGGAACACAAATGCAGTGAAAGAGCAGTGCATGAAGAATTGCATGAAGAATCACCGGTTACTGTTCCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

58.31

Weight (kDa)

5.67

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AatII GACGTC 1 cut(s) 39
Acc36I ACCTGC 2 cut(s) 702, 1154
AccB1I GGYRCC 1 cut(s) 1070
AccB7I CCANNNNNTGG 1 cut(s) 197
AccII CGCG 2 cut(s) 131, 141
AccIII TCCGGA 1 cut(s) 1555
AciI CCGC 5 cut(s) 26, 141, 398, 562, 786
AclWI GGATC 2 cut(s) 104, 440
AcoI YGGCCR 2 cut(s) 3, 628
AcsI RAATTY 6 cut(s) 393, 743, 764, 913, 1196, 1282
AcuI CTGAAG 3 cut(s) 243, 405, 830
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 2 cut(s) 940, 983
AfiI CCNNNNNNNGG 3 cut(s) 22, 197, 436
AgeI ACCGGT 1 cut(s) 1543
AgsI TTSAA 4 cut(s) 286, 815, 1193, 1356
AhlI ACTAGT 1 cut(s) 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 586, 618
AluBI AGCT 5 cut(s) 268, 410, 494, 677, 966
AluI AGCT 5 cut(s) 268, 410, 494, 677, 966
Alw21I GWGCWC 1 cut(s) 1309
Alw26I GTCTC 5 cut(s) 13, 713, 1283, 1362, 1423
AlwI GGATC 2 cut(s) 104, 440
Aor13HI TCCGGA 1 cut(s) 1555
AoxI GGCC 4 cut(s) 3, 156, 628, 990
ApeKI GCWGC 3 cut(s) 206, 407, 923
ApoI RAATTY 6 cut(s) 393, 743, 764, 913, 1196, 1282
ArsI GACNNNNNNTTYG 2 cut(s) 1403, 1435
AseI ATTAAT 2 cut(s) 522, 1122
AsiGI ACCGGT 1 cut(s) 1543
AspLEI GCGC 1 cut(s) 1347
AspS9I GGNCC 2 cut(s) 990, 1419
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 349, 1124, 1241, 1533
AvaII GGWCC 1 cut(s) 1419
BalI TGGCCA 1 cut(s) 630
BanI GGYRCC 1 cut(s) 1070
BbsI GAAGAC 1 cut(s) 1260
Bbv12I GWGCWC 1 cut(s) 1309
BbvI GCAGC 3 cut(s) 193, 419, 910
BccI CCATC 7 cut(s) 141, 229, 311, 568, 1088, 1310, 1386
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 5 cut(s) 13, 713, 1283, 1362, 1423
BcuI ACTAGT 1 cut(s) 1025
BfaI CTAG 6 cut(s) 210, 678, 804, 887, 1026, 1361
BfmI CTRYAG 1 cut(s) 1161
BfuAI ACCTGC 2 cut(s) 702, 1154
BisI GCNGC 5 cut(s) 27, 207, 408, 786, 924
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 5 cut(s) 28, 208, 409, 787, 925
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 1419
BmgT120I GGNCC 2 cut(s) 990, 1419
BmiI GGNNCC 2 cut(s) 931, 1072
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 2 cut(s) 319, 991
BpiI GAAGAC 1 cut(s) 1260
BplI GAGNNNNNCTC 2 cut(s) 1070, 1102
BpmI CTGGAG 1 cut(s) 1369
Bpu1102I GCTNAGC 1 cut(s) 264
BpuEI CTTGAG 3 cut(s) 680, 722, 857
BpuMI CCSGG 1 cut(s) 7
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 1423
BsaJI CCNNGG 3 cut(s) 6, 123, 365
BsaWI WCCGGW 2 cut(s) 1543, 1555
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 197, 436
Bse118I RCCGGY 1 cut(s) 1543
Bse1I ACTGG 5 cut(s) 159, 191, 408, 729, 1334
Bse3DI GCAATG 2 cut(s) 273, 380
BseAI TCCGGA 1 cut(s) 1555
BseDI CCNNGG 3 cut(s) 6, 123, 365
BseGI GGATG 3 cut(s) 322, 1159, 1255
BseLI CCNNNNNNNGG 3 cut(s) 22, 197, 436
BseMI GCAATG 2 cut(s) 273, 380
BseMII CTCAG 6 cut(s) 278, 537, 1089, 1101, 1278, 1322
BseNI ACTGG 5 cut(s) 159, 191, 408, 729, 1334
BseRI GAGGAG 3 cut(s) 113, 434, 594
BseXI GCAGC 3 cut(s) 193, 419, 910
Bsh1236I CGCG 2 cut(s) 131, 141
Bsh1285I CGRYCG 3 cut(s) 59, 129, 988
BshFI GGCC 4 cut(s) 5, 158, 630, 992
BshNI GGYRCC 1 cut(s) 1070
BshTI ACCGGT 1 cut(s) 1543
BsiEI CGRYCG 3 cut(s) 59, 129, 988
BsiHKAI GWGCWC 1 cut(s) 1309
BsiSI CCGG 4 cut(s) 6, 16, 1544, 1556
BslI CCNNNNNNNGG 3 cut(s) 22, 197, 436
BsmAI GTCTC 5 cut(s) 13, 713, 1283, 1362, 1423
BsmBI CGTCTC 2 cut(s) 13, 1283
BsnI GGCC 4 cut(s) 5, 158, 630, 992
Bso31I GGTCTC 1 cut(s) 1423
Bsp1286I GDGCHC 1 cut(s) 1309
Bsp13I TCCGGA 1 cut(s) 1555
Bsp143I GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
Bsp1720I GCTNAGC 1 cut(s) 264
Bsp68I TCGCGA 1 cut(s) 131
BspACI CCGC 5 cut(s) 26, 141, 398, 562, 786
BspANI GGCC 4 cut(s) 5, 158, 630, 992
BspCNI CTCAG 6 cut(s) 277, 538, 1088, 1100, 1279, 1321
BspEI TCCGGA 1 cut(s) 1555
BspFNI CGCG 2 cut(s) 131, 141
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 2 cut(s) 931, 1072
BspMAI CTGCAG 1 cut(s) 1165
BspMI ACCTGC 2 cut(s) 702, 1154
BspPI GGATC 2 cut(s) 104, 440
BspT107I GGYRCC 1 cut(s) 1070
BspTNI GGTCTC 1 cut(s) 1423
BsrDI GCAATG 2 cut(s) 273, 380
BsrFI RCCGGY 1 cut(s) 1543
BsrI ACTGG 5 cut(s) 159, 191, 408, 729, 1334
BssAI RCCGGY 1 cut(s) 1543
BssECI CCNNGG 3 cut(s) 6, 123, 365
BssMI GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 365
Bst4CI ACNGT 6 cut(s) 127, 343, 625, 1262, 1373, 1552
Bst6I CTCTTC 2 cut(s) 90, 1026
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 1180, 1343
BstDEI CTNAG 7 cut(s) 264, 546, 869, 1075, 1087, 1287, 1308
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 322, 1159, 1255
BstFNI CGCG 2 cut(s) 131, 141
BstHHI GCGC 1 cut(s) 1347
BstKTI GATC 7 cut(s) 59, 112, 180, 448, 586, 988, 1234
BstMAI GTCTC 5 cut(s) 13, 713, 1283, 1362, 1423
BstMBI GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
BstMCI CGRYCG 3 cut(s) 59, 129, 988
BstMWI GCNNNNNNNGC 4 cut(s) 128, 794, 892, 1010
BstNSI RCATGY 1 cut(s) 1189
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 1161
BstUI CGCG 2 cut(s) 131, 141
BstV1I GCAGC 3 cut(s) 193, 419, 910
BstV2I GAAGAC 1 cut(s) 1260
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 4 cut(s) 5, 158, 630, 992
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 322, 1159, 1255
BtsI GCAGTG 3 cut(s) 1173, 1510, 1521
BtsIMutI CAGTG 8 cut(s) 198, 719, 722, 1173, 1267, 1341, 1510, 1521
BtuMI TCGCGA 1 cut(s) 131
BveI ACCTGC 2 cut(s) 702, 1154
Cac8I GCNNGC 2 cut(s) 1180, 1343
CciI TCATGA 1 cut(s) 997
CfoI GCGC 1 cut(s) 1347
Cfr10I RCCGGY 1 cut(s) 1543
Cfr13I GGNCC 2 cut(s) 990, 1419
Csp6I GTAC 2 cut(s) 939, 982
CspAI ACCGGT 1 cut(s) 1543
CviAII CATG 6 cut(s) 998, 1186, 1243, 1387, 1520, 1532
CviQI GTAC 2 cut(s) 939, 982
DdeI CTNAG 7 cut(s) 264, 546, 869, 1075, 1087, 1287, 1308
DpnI GATC 7 cut(s) 58, 111, 179, 447, 585, 987, 1233
DpnII GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
DraIII CACNNNGTG 1 cut(s) 482
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 3, 628
Eam1104I CTCTTC 2 cut(s) 90, 1026
EarI CTCTTC 2 cut(s) 90, 1026
Eco130I CCWWGG 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 1423
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 1419
Eco57I CTGAAG 3 cut(s) 243, 405, 830
EcoRI GAATTC 1 cut(s) 764
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 365
Esp3I CGTCTC 2 cut(s) 13, 1283
FaeI CATG 6 cut(s) 1001, 1189, 1246, 1390, 1523, 1535
FatI CATG 6 cut(s) 997, 1185, 1242, 1386, 1519, 1531
Fnu4HI GCNGC 5 cut(s) 27, 207, 408, 786, 924
FokI GGATG 3 cut(s) 329, 1166, 1262
Fsp4HI GCNGC 5 cut(s) 27, 207, 408, 786, 924
FspBI CTAG 6 cut(s) 210, 678, 804, 887, 1026, 1361
GlaI GCGC 1 cut(s) 1346
GluI GCNGC 5 cut(s) 27, 207, 408, 786, 924
GsuI CTGGAG 1 cut(s) 1369
HaeIII GGCC 4 cut(s) 5, 158, 630, 992
HapII CCGG 4 cut(s) 6, 16, 1544, 1556
HhaI GCGC 1 cut(s) 1347
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 6 cut(s) 1001, 1189, 1246, 1390, 1523, 1535
Hin6I GCGC 1 cut(s) 1345
HinP1I GCGC 1 cut(s) 1345
HinfI GANTC 9 cut(s) 662, 815, 905, 1139, 1157, 1274, 1454, 1472, 1538
HpaII CCGG 4 cut(s) 6, 16, 1544, 1556
HphI GGTGA 4 cut(s) 349, 1124, 1241, 1533
Hpy166II GTNNAC 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 3 cut(s) 38, 41, 44
HpyAV CCTTC 8 cut(s) 38, 196, 280, 380, 605, 661, 1144, 1240
HpyCH4III ACNGT 6 cut(s) 127, 343, 625, 1262, 1373, 1552
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 7 cut(s) 620, 1042, 1163, 1178, 1503, 1519, 1531
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 794, 892, 1010
HpyF3I CTNAG 7 cut(s) 264, 546, 869, 1075, 1087, 1287, 1308
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 6 cut(s) 1001, 1189, 1246, 1390, 1523, 1535
HspAI GCGC 1 cut(s) 1345
Kpn2I TCCGGA 1 cut(s) 1555
Kzo9I GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 3 cut(s) 193, 419, 910
LweI GCATC 2 cut(s) 319, 991
MaeI CTAG 6 cut(s) 210, 678, 804, 887, 1026, 1361
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 7 cut(s) 337, 1169, 1262, 1271, 1405, 1439, 1546
MalI GATC 7 cut(s) 58, 111, 179, 447, 585, 987, 1233
MboI GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 1309
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 9 cut(s) 393, 651, 743, 764, 913, 1196, 1222, 1282, 1526
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 3 cut(s) 671, 1268, 1466
MmeI TCCRAC 1 cut(s) 473
Mox20I TGGCCA 1 cut(s) 630
MroI TCCGGA 1 cut(s) 1555
MscI TGGCCA 1 cut(s) 630
MseI TTAA 4 cut(s) 470, 522, 528, 1122
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 4 cut(s) 6, 16, 1544, 1556
MspR9I CCNGG 1 cut(s) 7
MvnI CGCG 2 cut(s) 131, 141
MwoI GCNNNNNNNGC 4 cut(s) 128, 794, 892, 1010
NciI CCSGG 1 cut(s) 7
NdeII GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
NlaIII CATG 6 cut(s) 1001, 1189, 1246, 1390, 1523, 1535
NlaIV GGNNCC 2 cut(s) 931, 1072
NmuCI GTSAC 4 cut(s) 337, 1169, 1262, 1271
NruI TCGCGA 1 cut(s) 131
NspI RCATGY 1 cut(s) 1189
PagI TCATGA 1 cut(s) 997
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 78
PfeI GAWTC 6 cut(s) 815, 905, 1139, 1157, 1454, 1538
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 1543
PkrI GCNGC 5 cut(s) 28, 208, 409, 787, 925
Ple19I CGATCG 2 cut(s) 59, 988
PleI GAGTC 3 cut(s) 670, 1268, 1466
PpsI GAGTC 3 cut(s) 670, 1268, 1466
PshBI ATTAAT 2 cut(s) 522, 1122
PspN4I GGNNCC 2 cut(s) 931, 1072
PspPI GGNCC 2 cut(s) 990, 1419
PsrI GAACNNNNNNTAC 2 cut(s) 922, 954
PstI CTGCAG 1 cut(s) 1165
PsuI RGATCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 38
PvuI CGATCG 2 cut(s) 59, 988
RruI TCGCGA 1 cut(s) 131
RsaI GTAC 2 cut(s) 940, 983
RsaNI GTAC 2 cut(s) 939, 982
SaqAI TTAA 4 cut(s) 470, 522, 528, 1122
SatI GCNGC 5 cut(s) 27, 207, 408, 786, 924
Sau3AI GATC 7 cut(s) 56, 109, 177, 445, 583, 985, 1231
Sau96I GGNCC 2 cut(s) 990, 1419
SchI GAGTC 3 cut(s) 671, 1268, 1466
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 1309
SfaNI GCATC 2 cut(s) 319, 991
SfcI CTRYAG 1 cut(s) 1161
SinI GGWCC 1 cut(s) 1419
SmlI CTYRAG 3 cut(s) 659, 737, 836
SmoI CTYRAG 3 cut(s) 659, 737, 836
SpeI ACTAGT 1 cut(s) 1025
Sse9I AATT 9 cut(s) 393, 651, 743, 764, 913, 1196, 1222, 1282, 1526
SsiI CCGC 5 cut(s) 26, 141, 398, 562, 786
SspMI CTAG 6 cut(s) 210, 678, 804, 887, 1026, 1361
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 6 cut(s) 127, 343, 625, 1262, 1373, 1552
TaiI ACGT 1 cut(s) 39
TaqI TCGA 5 cut(s) 42, 231, 586, 665, 908
TasI AATT 9 cut(s) 393, 651, 743, 764, 913, 1196, 1222, 1282, 1526
TauI GCSGC 2 cut(s) 29, 788
TfiI GAWTC 6 cut(s) 815, 905, 1139, 1157, 1454, 1538
Tru1I TTAA 4 cut(s) 470, 522, 528, 1122
Tru9I TTAA 4 cut(s) 470, 522, 528, 1122
TscAI CASTG 8 cut(s) 198, 719, 729, 1180, 1267, 1341, 1510, 1521
TseFI GTSAC 4 cut(s) 337, 1169, 1262, 1271
TseI GCWGC 3 cut(s) 206, 407, 923
Tsp45I GTSAC 4 cut(s) 337, 1169, 1262, 1271
TspDTI ATGAA 9 cut(s) 624, 777, 986, 1170, 1259, 1266, 1497, 1536, 1548
TspGWI ACGGA 2 cut(s) 151, 1307
TspRI CASTG 8 cut(s) 198, 719, 729, 1180, 1267, 1341, 1510, 1521
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 1419
VspI ATTAAT 2 cut(s) 522, 1122
XapI RAATTY 6 cut(s) 393, 743, 764, 913, 1196, 1282
XceI RCATGY 1 cut(s) 1189
XcmI CCANNNNNNNNNTGG 1 cut(s) 1274
XspI CTAG 6 cut(s) 210, 678, 804, 887, 1026, 1361
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.