Rorug06G0215800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
34441901 .. 34446515
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0215800.1

Sequence Viewer

Length: 1110 bp
ATGGAGAGCAGACTCTCCGCCTCTCTAGGCCTCCCCTCTCCAAACCCAGGCCACCACCATTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACCGCCACCAAATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAATCCATAATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGAGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAAGGGCGTCCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCCTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCCGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACGTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACCTGAAAGCCGCGGTCCTGAGCAAGACGAAGCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGTTGGACGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTCGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGTTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCATAGTGCCTGCTTTTCGGCATTGGGCTACTTTGCTTTCGAGACGGCTAGGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTGATGCTCCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

39.34

Weight (kDa)

9.5

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 82 - 163 6.8e-19 Mitochondrial carrier protein
Mito_carr PF00153 175 - 252 1.7e-12 Mitochondrial carrier protein
Mito_carr PF00153 260 - 351 4.7e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 467, 613
Acc36I ACCTGC 2 cut(s) 467, 613
AccB1I GGYRCC 6 cut(s) 236, 323, 455, 530, 565, 806
AccB7I CCANNNNNTGG 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 2 cut(s) 336, 447
AccII CGCG 1 cut(s) 749
AclI AACGTT 1 cut(s) 686
AclWI GGATC 2 cut(s) 502, 631
AcoI YGGCCR 2 cut(s) 555, 813
AcuI CTGAAG 1 cut(s) 653
AcyI GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
AfaI GTAC 1 cut(s) 737
AfiI CCNNNNNNNGG 6 cut(s) 47, 159, 184, 379, 527, 612
AgsI TTSAA 1 cut(s) 1057
AjnI CCWGG 3 cut(s) 46, 387, 617
AluBI AGCT 4 cut(s) 310, 577, 720, 821
AluI AGCT 4 cut(s) 310, 577, 720, 821
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 3 cut(s) 553, 917, 1028
AlwI GGATC 2 cut(s) 502, 631
AlwNI CAGNNNCTG 1 cut(s) 940
ApaI GGGCCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 586, 896
AspLEI GCGC 4 cut(s) 239, 326, 533, 809
AspS9I GGNCC 9 cut(s) 162, 225, 226, 603, 615, 661, 751, 772, 980
AsuC2I CCSGG 2 cut(s) 601, 709
AsuHPI GGTGA 4 cut(s) 85, 259, 940, 1106
AvaII GGWCC 2 cut(s) 615, 751
BaeGI GKGCMC 2 cut(s) 229, 570
BanI GGYRCC 6 cut(s) 236, 323, 455, 530, 565, 806
BanII GRGCYC 3 cut(s) 229, 579, 786
BbsI GAAGAC 2 cut(s) 208, 866
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 598, 883
BccI CCATC 2 cut(s) 305, 460
BceAI ACGGC 6 cut(s) 341, 398, 428, 667, 829, 1053
BciT130I CCWGG 3 cut(s) 48, 389, 619
BcnI CCSGG 2 cut(s) 601, 709
BcoDI GTCTC 3 cut(s) 553, 917, 1028
BfaI CTAG 2 cut(s) 26, 1041
BfoI RGCGCY 4 cut(s) 240, 327, 534, 810
BfuAI ACCTGC 2 cut(s) 467, 613
BisI GCNGC 6 cut(s) 244, 403, 587, 747, 805, 897
BlsI GCNGC 6 cut(s) 245, 404, 588, 748, 806, 898
Bme1390I CCNGG 5 cut(s) 48, 389, 601, 619, 709
Bme18I GGWCC 2 cut(s) 615, 751
BmgT120I GGNCC 9 cut(s) 162, 225, 226, 603, 615, 661, 751, 772, 980
BmrFI CCNGG 5 cut(s) 48, 389, 601, 619, 709
BmsI GCATC 4 cut(s) 261, 414, 582, 1087
BpiI GAAGAC 2 cut(s) 208, 866
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 755
BpuEI CTTGAG 2 cut(s) 347, 736
BpuMI CCSGG 2 cut(s) 601, 709
BsaBI GATNNNNATC 1 cut(s) 512
BsaHI GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 6 cut(s) 47, 159, 184, 379, 527, 612
Bse118I RCCGGY 3 cut(s) 239, 527, 612
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 3 cut(s) 48, 389, 619
BseGI GGATG 3 cut(s) 123, 513, 597
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 6 cut(s) 47, 159, 184, 379, 527, 612
BseMII CTCAG 3 cut(s) 706, 746, 890
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 2 cut(s) 229, 570
BseXI GCAGC 2 cut(s) 598, 883
BsgI GTGCAG 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 749
BshNI GGYRCC 6 cut(s) 236, 323, 455, 530, 565, 806
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 8 cut(s) 240, 258, 528, 600, 613, 708, 816, 1103
BslI CCNNNNNNNGG 6 cut(s) 47, 159, 184, 379, 527, 612
BsmAI GTCTC 3 cut(s) 553, 917, 1028
BsmBI CGTCTC 3 cut(s) 553, 917, 1028
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 4 cut(s) 229, 570, 579, 786
Bsp143I GATC 2 cut(s) 507, 636
Bsp19I CCATGG 1 cut(s) 534
BspCNI CTCAG 3 cut(s) 705, 747, 889
BspFNI CGCG 1 cut(s) 749
BspMI ACCTGC 2 cut(s) 467, 613
BspPI GGATC 2 cut(s) 502, 631
BspT107I GGYRCC 6 cut(s) 236, 323, 455, 530, 565, 806
BsrBI CCGCTC 1 cut(s) 223
BsrFI RCCGGY 3 cut(s) 239, 527, 612
BssAI RCCGGY 3 cut(s) 239, 527, 612
BssMI GATC 2 cut(s) 507, 636
BssNI GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
BssT1I CCWWGG 5 cut(s) 183, 378, 534, 570, 810
Bst2UI CCWGG 3 cut(s) 48, 389, 619
Bst4CI ACNGT 1 cut(s) 928
Bst6I CTCTTC 3 cut(s) 95, 556, 730
BstACI GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
BstAPI GCANNNNNTGC 2 cut(s) 592, 628
BstDEI CTNAG 3 cut(s) 692, 755, 876
BstDSI CCRYGG 2 cut(s) 534, 747
BstF5I GGATG 3 cut(s) 123, 513, 597
BstFNI CGCG 1 cut(s) 749
BstH2I RGCGCY 4 cut(s) 240, 327, 534, 810
BstHHI GCGC 4 cut(s) 239, 326, 533, 809
BstKTI GATC 2 cut(s) 510, 639
BstMAI GTCTC 3 cut(s) 553, 917, 1028
BstMBI GATC 2 cut(s) 507, 636
BstNI CCWGG 3 cut(s) 48, 389, 619
BstSCI CCNGG 5 cut(s) 46, 387, 599, 617, 707
BstSLI GKGCMC 2 cut(s) 229, 570
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 2 cut(s) 598, 883
BstV2I GAAGAC 2 cut(s) 208, 866
BstX2I RGATCY 1 cut(s) 636
BstYI RGATCY 1 cut(s) 636
BtgI CCRYGG 2 cut(s) 534, 747
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 3 cut(s) 123, 513, 597
BveI ACCTGC 2 cut(s) 467, 613
CaiI CAGNNNCTG 1 cut(s) 940
CfoI GCGC 4 cut(s) 239, 326, 533, 809
Cfr10I RCCGGY 3 cut(s) 239, 527, 612
Cfr13I GGNCC 9 cut(s) 162, 225, 226, 603, 615, 661, 751, 772, 980
Cfr42I CCGCGG 1 cut(s) 750
CseI GACGC 3 cut(s) 362, 373, 850
Csp6I GTAC 1 cut(s) 736
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 3 cut(s) 692, 755, 876
DinI GGCGCC 4 cut(s) 238, 325, 532, 808
DpnI GATC 2 cut(s) 509, 638
DpnII GATC 2 cut(s) 507, 636
EaeI YGGCCR 2 cut(s) 555, 813
Eam1104I CTCTTC 3 cut(s) 95, 556, 730
EarI CTCTTC 3 cut(s) 95, 556, 730
EciI GGCGGA 4 cut(s) 7, 261, 400, 430
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 5 cut(s) 183, 378, 534, 570, 810
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 3 cut(s) 229, 579, 786
Eco47I GGWCC 2 cut(s) 615, 751
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 3 cut(s) 46, 387, 617
EcoT14I CCWWGG 5 cut(s) 183, 378, 534, 570, 810
EcoT38I GRGCYC 3 cut(s) 229, 579, 786
EgeI GGCGCC 4 cut(s) 238, 325, 532, 808
EheI GGCGCC 4 cut(s) 238, 325, 532, 808
ErhI CCWWGG 5 cut(s) 183, 378, 534, 570, 810
Esp3I CGTCTC 3 cut(s) 553, 917, 1028
FaeI CATG 1 cut(s) 538
FaiI YATR 5 cut(s) 197, 536, 560, 996, 1065
FatI CATG 1 cut(s) 534
FauI CCCGC 4 cut(s) 182, 186, 216, 712
FblI GTMKAC 2 cut(s) 336, 447
Fnu4HI GCNGC 6 cut(s) 244, 403, 587, 747, 805, 897
FokI GGATG 3 cut(s) 110, 500, 604
FriOI GRGCYC 3 cut(s) 229, 579, 786
Fsp4HI GCNGC 6 cut(s) 244, 403, 587, 747, 805, 897
FspBI CTAG 2 cut(s) 26, 1041
GlaI GCGC 4 cut(s) 238, 325, 532, 808
GluI GCNGC 6 cut(s) 244, 403, 587, 747, 805, 897
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 4 cut(s) 240, 327, 534, 810
HapII CCGG 8 cut(s) 240, 258, 528, 600, 613, 708, 816, 1103
HgaI GACGC 3 cut(s) 362, 373, 850
HhaI GCGC 4 cut(s) 239, 326, 533, 809
Hin1I GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
Hin1II CATG 1 cut(s) 538
Hin6I GCGC 4 cut(s) 237, 324, 531, 807
HinP1I GCGC 4 cut(s) 237, 324, 531, 807
HinfI GANTC 4 cut(s) 12, 874, 937, 963
HpaII CCGG 8 cut(s) 240, 258, 528, 600, 613, 708, 816, 1103
HphI GGTGA 4 cut(s) 85, 259, 940, 1106
Hpy166II GTNNAC 2 cut(s) 337, 448
Hpy188I TCNGA 7 cut(s) 73, 331, 695, 792, 879, 922, 942
Hpy188III TCNNGA 8 cut(s) 301, 313, 364, 373, 715, 754, 1033, 1069
Hpy8I GTNNAC 2 cut(s) 337, 448
Hpy99I CGWCG 4 cut(s) 356, 425, 653, 844
HpyAV CCTTC 6 cut(s) 274, 358, 379, 739, 944, 1069
HpyCH4III ACNGT 1 cut(s) 928
HpyCH4IV ACGT 2 cut(s) 686, 852
HpyCH4V TGCA 3 cut(s) 595, 907, 1084
HpyF3I CTNAG 3 cut(s) 692, 755, 876
HpySE526I ACGT 2 cut(s) 686, 852
Hsp92I GRCGYC 7 cut(s) 237, 324, 354, 384, 531, 807, 842
Hsp92II CATG 1 cut(s) 538
HspAI GCGC 4 cut(s) 237, 324, 531, 807
KasI GGCGCC 4 cut(s) 236, 323, 530, 806
KroI GCCGGC 2 cut(s) 239, 527
KroNI GCCGGC 2 cut(s) 241, 529
KspI CCGCGG 1 cut(s) 750
Kzo9I GATC 2 cut(s) 507, 636
LmnI GCTCC 7 cut(s) 260, 315, 431, 574, 781, 818, 1105
Lsp1109I GCAGC 2 cut(s) 598, 883
LweI GCATC 4 cut(s) 261, 414, 582, 1087
MaeI CTAG 2 cut(s) 26, 1041
MaeII ACGT 2 cut(s) 686, 852
MalI GATC 2 cut(s) 509, 638
MbiI CCGCTC 1 cut(s) 223
MboI GATC 2 cut(s) 507, 636
MflI RGATCY 1 cut(s) 636
MhlI GDGCHC 4 cut(s) 229, 570, 579, 786
MluCI AATT 2 cut(s) 488, 1089
Mly113I GGCGCC 4 cut(s) 237, 324, 531, 807
MlyI GAGTC 2 cut(s) 6, 868
MmeI TCCRAC 2 cut(s) 192, 828
MreI CGCCGGCG 2 cut(s) 239, 527
MroNI GCCGGC 2 cut(s) 239, 527
MslI CAYNNNNRTG 1 cut(s) 563
MspA1I CMGCKG 3 cut(s) 402, 589, 749
MspI CCGG 8 cut(s) 240, 258, 528, 600, 613, 708, 816, 1103
MspR9I CCNGG 5 cut(s) 48, 389, 601, 619, 709
MvaI CCWGG 3 cut(s) 48, 389, 619
MvnI CGCG 1 cut(s) 749
NaeI GCCGGC 2 cut(s) 241, 529
NarI GGCGCC 4 cut(s) 237, 324, 531, 807
NciI CCSGG 2 cut(s) 601, 709
NcoI CCATGG 1 cut(s) 534
NdeII GATC 2 cut(s) 507, 636
NgoMIV GCCGGC 2 cut(s) 239, 527
NlaIII CATG 1 cut(s) 538
NmeAIII GCCGAG 2 cut(s) 806, 1008
PaqCI CACCTGC 2 cut(s) 467, 613
PceI AGGCCT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdiI GCCGGC 2 cut(s) 241, 529
PfeI GAWTC 2 cut(s) 937, 963
PflFI GACNNNGTC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 6 cut(s) 245, 404, 588, 748, 806, 898
PleI GAGTC 2 cut(s) 6, 868
PluTI GGCGCC 4 cut(s) 240, 327, 534, 810
PpsI GAGTC 2 cut(s) 6, 868
Psp124BI GAGCTC 1 cut(s) 579
Psp1406I AACGTT 1 cut(s) 686
Psp6I CCWGG 3 cut(s) 46, 387, 617
PspGI CCWGG 3 cut(s) 46, 387, 617
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 9 cut(s) 162, 225, 226, 603, 615, 661, 751, 772, 980
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 1 cut(s) 636
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
RseI CAYNNNNRTG 1 cut(s) 563
SacI GAGCTC 1 cut(s) 579
SacII CCGCGG 1 cut(s) 750
SatI GCNGC 6 cut(s) 244, 403, 587, 747, 805, 897
Sau3AI GATC 2 cut(s) 507, 636
Sau96I GGNCC 9 cut(s) 162, 225, 226, 603, 615, 661, 751, 772, 980
SchI GAGTC 2 cut(s) 6, 868
ScrFI CCNGG 5 cut(s) 48, 389, 601, 619, 709
SduI GDGCHC 4 cut(s) 229, 570, 579, 786
SfaNI GCATC 4 cut(s) 261, 414, 582, 1087
SfoI GGCGCC 4 cut(s) 238, 325, 532, 808
Sfr303I CCGCGG 1 cut(s) 750
SgrAI CRCCGGYG 2 cut(s) 239, 527
SgrBI CCGCGG 1 cut(s) 750
SinI GGWCC 2 cut(s) 615, 751
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 362, 715
SmoI CTYRAG 2 cut(s) 362, 715
Sse9I AATT 2 cut(s) 488, 1089
SseBI AGGCCT 1 cut(s) 30
SspDI GGCGCC 4 cut(s) 236, 323, 530, 806
SspMI CTAG 2 cut(s) 26, 1041
SstI GAGCTC 1 cut(s) 579
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 5 cut(s) 46, 387, 599, 617, 707
StyI CCWWGG 5 cut(s) 183, 378, 534, 570, 810
TaaI ACNGT 1 cut(s) 928
TaiI ACGT 2 cut(s) 689, 855
TaqI TCGA 6 cut(s) 219, 291, 351, 642, 732, 1032
TasI AATT 2 cut(s) 488, 1089
TauI GCSGC 4 cut(s) 246, 405, 749, 807
TfiI GAWTC 2 cut(s) 937, 963
TseI GCWGC 2 cut(s) 586, 896
TspDTI ATGAA 2 cut(s) 215, 983
TspGWI ACGGA 1 cut(s) 202
Tth111I GACNNNGTC 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 2 cut(s) 615, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 336, 447
XspI CTAG 2 cut(s) 26, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.