Rroxscaffold_1G00034380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002118
Physical Location & Seq
Reverse (-)
49909175 .. 49910183
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034380.1

Sequence Viewer

Length: 432 bp
ATGATCTTTCCAAAACAGGCATCAGCATTTTTAATAATTTATCCGGTAAACAATGCTATTAATAAGGAGGGGAATGAAACTGAAAGAGCAGTGGCATGGGAGAAGGCCTTTCTTGAGTTGGCAAAGCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGTTTCAAATGGGAAACACAAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGATGAACTCTCATCACGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCCGCTCTTGAGAAACTTCGAAGTTACAAGACGGCTGCTAGTGGATTCTCTGCTAAGCTCACTCAACAGCGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

7.74

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 359
AciI CCGC 2 cut(s) 190, 357
AcsI RAATTY 2 cut(s) 177, 269
AgsI TTSAA 2 cut(s) 238, 341
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 326, 389
ApoI RAATTY 2 cut(s) 177, 269
AseI ATTAAT 2 cut(s) 60, 150
AsuII TTCGAA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 263
BbvI GCAGC 2 cut(s) 313, 376
BceAI ACGGC 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 327, 390
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 2 cut(s) 328, 391
BmeT110I CYCGRG 1 cut(s) 263
BmsI GCATC 5 cut(s) 29, 124, 145, 313, 337
Bpu1102I GCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 2 cut(s) 134, 383
BsaWI WCCGGW 1 cut(s) 43
BseGI GGATG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 313, 376
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 204
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 373
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 408
BspACI CCGC 2 cut(s) 190, 357
BspANI GGCC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 373
BsrBI CCGCTC 1 cut(s) 359
BssMI GATC 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 373
BstDEI CTNAG 2 cut(s) 330, 408
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 313, 376
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 96, 144
BtsIMutI CAGTG 2 cut(s) 96, 144
CviAII CATG 1 cut(s) 96
CviJI RGCY 4 cut(s) 107, 143, 389, 412
CviKI_1 RGCY 4 cut(s) 107, 143, 389, 412
DdeI CTNAG 2 cut(s) 330, 408
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco147I AGGCCT 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 1 cut(s) 99
FaiI YATR 3 cut(s) 97, 147, 284
FatI CATG 1 cut(s) 95
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 327, 390
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 327, 390
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 327, 390
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 44
Hin1II CATG 1 cut(s) 99
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 162, 276
Hpy188III TCNNGA 3 cut(s) 113, 263, 362
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 137, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 330, 408
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 3 cut(s) 2, 57, 297
Lsp1109I GCAGC 2 cut(s) 313, 376
LweI GCATC 5 cut(s) 29, 124, 145, 313, 337
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 359
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 174
MluCI AATT 3 cut(s) 36, 177, 269
MnlI CCTC 4 cut(s) 61, 200, 213, 259
MseI TTAA 3 cut(s) 32, 60, 150
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 99
NspV TTCGAA 1 cut(s) 373
PaeR7I CTCGAG 1 cut(s) 263
PceI AGGCCT 1 cut(s) 107
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 2 cut(s) 328, 391
PshBI ATTAAT 2 cut(s) 60, 150
SaqAI TTAA 3 cut(s) 32, 60, 150
SatI GCNGC 2 cut(s) 327, 390
Sau3AI GATC 1 cut(s) 3
SetI ASST 2 cut(s) 322, 414
SfaNI GCATC 5 cut(s) 29, 124, 145, 313, 337
Sfr274I CTCGAG 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 113, 263, 362
SmoI CTYRAG 3 cut(s) 113, 263, 362
Sse9I AATT 3 cut(s) 36, 177, 269
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 2 cut(s) 190, 357
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 107
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 264, 373
TasI AATT 3 cut(s) 36, 177, 269
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 3 cut(s) 32, 60, 150
Tru9I TTAA 3 cut(s) 32, 60, 150
TscAI CASTG 2 cut(s) 96, 144
TseI GCWGC 2 cut(s) 326, 389
TspDTI ATGAA 3 cut(s) 90, 174, 303
TspRI CASTG 2 cut(s) 96, 144
VspI ATTAAT 2 cut(s) 60, 150
XapI RAATTY 2 cut(s) 177, 269
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.