RLG00000034454

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002118
Physical Location & Seq
Forward (+)
42924493 .. 42933159
8667 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034454

Sequence Viewer

Length: 1209 bp
ATGGTCACATTAAGATACAGGCTTCCAATTCGCTCCAACAAACAAGATTTCAAGAATCTATCTTCAACAACCAACGAACCAGGTCTCCCAGTGGGGGTCATGTTCCGTCCTACAGACCACGAACTCCTCGATTACTACCTCCACAGCAGGATTTCCATGGGTGACCACTTTCACTCCAACTTCGTCTCTGACTGTCCTGATTTTTACGGAAATAATGAGCCCTGGGTTGTTTGTTCACCAACCTCGAGAAAATCAAGAGCTCCGCGCTCCGATTCATTTCACAGAGATCGAGGGATTCAGGTCGGAGATTTCTCGACGGTGAGTTTGAATTCGGAATTGGTGCGGAAGCTGGAGTCGGCGCTTGGGGTTTCGCTGGGAGGCTCGGTGACGGACATGGCGGTGGTGATAGCGATGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGCAGAGATCGTCTGATAAGACTAGTTGGGTGGTGAAGCAGCTGGCTCTGAGCTCCAGCGGTCCAGCCTCCAGAGAGGAGATAGCACGTTATAAAGGACTTGATCCGACAGAGCGTTTACCAATGTTAAAAGCACTCTATGAACTCCGAGCCGATCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACAGAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATGGGTCATAGATTATACAAGGCATGCCAGGATTTTACCAATTATTTATGTCAGGTTTCACCTGCTACTACTATTATTGCTGCAACTGATTTATCTATTTGGCAGCGACGATCCGAATTGTTCTACACCCAAAAGGATGTTGATGTTGTGAGGTCAGAGTGGGAGGATGATAGTGTTATTGGGATCAAGAGGGAGTTTCGATATGAGGGTGGTTGCGATTCTCGTCACAACGAGGCTTGGTTGATCCAAGAGTACCATATCATTGATGATGATTCTGATATTGTACCATGCACTTTGAGAAAGAACCCTAGAAAGGCACCACCTACTCAAAGGAGCAATGTTGTTGAAAAGACCAAAGTGAATGACAAAACGAGAAACAGCCTAGTGGATCAACCCGAATGCCCAAATCGAAAAAGTAGAAAAAGGAAGAAAGTTTTGATCAGGAACAAGAAGGCAGTAGTGTTGATTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

403

Amino Acids

45.94

Weight (kDa)

9.07

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 30 - 80 2.9e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AarI CACCTGC 1 cut(s) 805
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 1 cut(s) 1051
AccII CGCG 1 cut(s) 265
AciI CCGC 5 cut(s) 263, 343, 398, 513, 673
AclWI GGATC 5 cut(s) 551, 840, 926, 973, 1131
AcsI RAATTY 2 cut(s) 328, 660
AfaI GTAC 2 cut(s) 989, 1020
AfiI CCNNNNNNNGG 2 cut(s) 94, 1048
AgsI TTSAA 5 cut(s) 52, 66, 328, 420, 1082
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 3 cut(s) 79, 221, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 4 cut(s) 260, 349, 496, 507
AluI AGCT 4 cut(s) 260, 349, 496, 507
Alw21I GWGCWC 2 cut(s) 262, 509
Alw26I GTCTC 3 cut(s) 89, 190, 687
AlwI GGATC 5 cut(s) 551, 840, 926, 973, 1131
Ama87I CYCGRG 1 cut(s) 244
ApeKI GCWGC 3 cut(s) 493, 815, 838
ApoI RAATTY 2 cut(s) 328, 660
ArsI GACNNNNNNTTYG 2 cut(s) 307, 339
AseI ATTAAT 1 cut(s) 633
AspLEI GCGC 2 cut(s) 267, 361
AspS9I GGNCC 1 cut(s) 515
AsuHPI GGTGA 7 cut(s) 173, 228, 331, 397, 415, 499, 786
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 515
BanI GGYRCC 1 cut(s) 1051
BanII GRGCYC 3 cut(s) 222, 262, 509
Bbv12I GWGCWC 2 cut(s) 262, 509
BbvI GCAGC 3 cut(s) 505, 802, 850
BccI CCATC 1 cut(s) 716
BciT130I CCWGG 3 cut(s) 81, 223, 764
BclI TGATCA 1 cut(s) 1173
BcoDI GTCTC 3 cut(s) 89, 190, 687
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 477, 1044, 1118
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 805
BisI GCNGC 3 cut(s) 494, 816, 839
BlsI GCNGC 3 cut(s) 495, 817, 840
Bme1390I CCNGG 3 cut(s) 81, 223, 764
Bme18I GGWCC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 1053
BmrFI CCNGG 3 cut(s) 81, 223, 764
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 607, 628
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 3 cut(s) 371, 493, 508
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 156, 221, 222
BsaXI ACNNNNNCTCC 6 cut(s) 69, 99, 158, 188, 369, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 1048
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 1078
BseBI CCWGG 3 cut(s) 81, 223, 764
BseDI CCNNGG 3 cut(s) 156, 221, 222
BseGI GGATG 2 cut(s) 877, 907
BseLI CCNNNNNNNGG 2 cut(s) 94, 1048
BseMI GCAATG 1 cut(s) 1078
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 89
BseRI GAGGAG 3 cut(s) 116, 545, 705
BseXI GCAGC 3 cut(s) 505, 802, 850
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 1051
BsiHKAI GWGCWC 2 cut(s) 262, 509
BsiHKCI CYCGRG 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 94, 1048
BsmAI GTCTC 3 cut(s) 89, 190, 687
BsmBI CGTCTC 1 cut(s) 190
BsmI GAATGC 1 cut(s) 1139
Bso31I GGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 3 cut(s) 222, 262, 509
Bsp143I GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 5 cut(s) 263, 343, 398, 513, 673
BspCNI CTCAG 1 cut(s) 495
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 1053
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 5 cut(s) 551, 840, 926, 973, 1131
BspT107I GGYRCC 1 cut(s) 1051
BspTNI GGTCTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 1078
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 156, 221, 222
BssMI GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 81, 223, 764
Bst4CI ACNGT 2 cut(s) 194, 319
BstC8I GCNNGC 2 cut(s) 498, 760
BstDEI CTNAG 1 cut(s) 503
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 2 cut(s) 877, 907
BstFNI CGCG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 267, 361
BstKTI GATC 9 cut(s) 289, 464, 559, 610, 848, 921, 981, 1126, 1176
BstMAI GTCTC 3 cut(s) 89, 190, 687
BstMBI GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
BstNI CCWGG 3 cut(s) 81, 223, 764
BstNSI RCATGY 1 cut(s) 762
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 79, 221, 762
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 505, 802, 850
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 877, 907
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 96, 627
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 2 cut(s) 498, 760
CfoI GCGC 2 cut(s) 267, 361
Cfr13I GGNCC 1 cut(s) 515
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 2 cut(s) 988, 1019
CviAII CATG 5 cut(s) 100, 157, 394, 759, 1023
CviQI GTAC 2 cut(s) 988, 1019
DdeI CTNAG 1 cut(s) 503
DpnI GATC 9 cut(s) 288, 463, 558, 609, 847, 920, 980, 1125, 1175
DpnII GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
Ecl136II GAGCTC 2 cut(s) 260, 507
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 3 cut(s) 222, 262, 509
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 515
Eco53kI GAGCTC 2 cut(s) 260, 507
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 161
EcoICRI GAGCTC 2 cut(s) 260, 507
EcoO65I GGTNACC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 79, 221, 762
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 3 cut(s) 222, 262, 509
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 5 cut(s) 103, 160, 397, 762, 1026
FatI CATG 5 cut(s) 99, 156, 393, 758, 1022
FbaI TGATCA 1 cut(s) 1173
Fnu4HI GCNGC 3 cut(s) 494, 816, 839
FokI GGATG 2 cut(s) 884, 914
FriOI GRGCYC 3 cut(s) 222, 262, 509
Fsp4HI GCNGC 3 cut(s) 494, 816, 839
FspBI CTAG 3 cut(s) 477, 1044, 1118
GlaI GCGC 2 cut(s) 266, 360
GluI GCNGC 3 cut(s) 494, 816, 839
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 3 cut(s) 371, 493, 508
HaeII RGCGCY 1 cut(s) 362
HhaI GCGC 2 cut(s) 267, 361
Hin1II CATG 5 cut(s) 103, 160, 397, 762, 1026
Hin6I GCGC 2 cut(s) 265, 359
HinP1I GCGC 2 cut(s) 265, 359
HinfI GANTC 6 cut(s) 55, 272, 295, 353, 953, 1007
HphI GGTGA 7 cut(s) 173, 228, 331, 397, 415, 499, 786
Hpy166II GTNNAC 2 cut(s) 236, 572
Hpy188III TCNNGA 9 cut(s) 52, 197, 246, 255, 313, 525, 611, 922, 1177
Hpy8I GTNNAC 2 cut(s) 236, 572
Hpy99I CGWCG 2 cut(s) 319, 846
HpyAV CCTTC 1 cut(s) 1180
HpyCH4III ACNGT 2 cut(s) 194, 319
HpyCH4IV ACGT 1 cut(s) 541
HpyCH4V TGCA 3 cut(s) 620, 818, 1026
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 1 cut(s) 541
Hsp92II CATG 5 cut(s) 103, 160, 397, 762, 1026
HspAI GCGC 2 cut(s) 265, 359
Ksp22I TGATCA 1 cut(s) 1173
Kzo9I GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
LmnI GCTCC 5 cut(s) 38, 265, 272, 512, 1068
Lsp1109I GCAGC 3 cut(s) 505, 802, 850
LweI GCATC 2 cut(s) 607, 628
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 3 cut(s) 477, 1044, 1118
MaeII ACGT 1 cut(s) 541
MaeIII GTNAC 4 cut(s) 4, 161, 385, 959
MalI GATC 9 cut(s) 288, 463, 558, 609, 847, 920, 980, 1125, 1175
MboI GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
MboII GAAGA 3 cut(s) 54, 657, 1174
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 3 cut(s) 222, 262, 509
MluCI AATT 8 cut(s) 27, 328, 335, 420, 432, 660, 775, 851
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 4 cut(s) 60, 201, 283, 584
MseI TTAA 3 cut(s) 11, 581, 633
MslI CAYNNNNRTG 1 cut(s) 398
MspA1I CMGCKG 2 cut(s) 496, 513
MspR9I CCNGG 3 cut(s) 81, 223, 764
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 1139
MvaI CCWGG 3 cut(s) 81, 223, 764
MvnI CGCG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 156
NdeII GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
NlaIII CATG 5 cut(s) 103, 160, 397, 762, 1026
NlaIV GGNNCC 1 cut(s) 1053
NmuCI GTSAC 4 cut(s) 4, 161, 385, 959
NspI RCATGY 1 cut(s) 762
PaeI GCATGC 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 805
PasI CCCWGGG 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 1139
PfeI GAWTC 5 cut(s) 55, 272, 295, 953, 1007
PkrI GCNGC 3 cut(s) 495, 817, 840
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 1 cut(s) 546
Psp124BI GAGCTC 2 cut(s) 262, 509
Psp6I CCWGG 3 cut(s) 79, 221, 762
PspEI GGTNACC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 3 cut(s) 79, 221, 762
PspN4I GGNNCC 1 cut(s) 1053
PspPI GGNCC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 2 cut(s) 989, 1020
RsaNI GTAC 2 cut(s) 988, 1019
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 2 cut(s) 262, 509
SaqAI TTAA 3 cut(s) 11, 581, 633
SatI GCNGC 3 cut(s) 494, 816, 839
Sau3AI GATC 9 cut(s) 286, 461, 556, 607, 845, 918, 978, 1123, 1173
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 3 cut(s) 81, 223, 764
SduI GDGCHC 3 cut(s) 222, 262, 509
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 2 cut(s) 607, 628
SfcI CTRYAG 1 cut(s) 111
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 515
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 244
SmoI CTYRAG 1 cut(s) 244
SpeI ACTAGT 1 cut(s) 476
SphI GCATGC 1 cut(s) 762
Sse9I AATT 8 cut(s) 27, 328, 335, 420, 432, 660, 775, 851
SsiI CCGC 5 cut(s) 263, 343, 398, 513, 673
SspMI CTAG 3 cut(s) 477, 1044, 1118
SstI GAGCTC 2 cut(s) 262, 509
StyD4I CCNGG 3 cut(s) 79, 221, 762
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 194, 319
TaiI ACGT 1 cut(s) 544
TaqI TCGA 6 cut(s) 129, 245, 289, 314, 934, 1144
TasI AATT 8 cut(s) 27, 328, 335, 420, 432, 660, 775, 851
TfiI GAWTC 5 cut(s) 55, 272, 295, 953, 1007
Tru1I TTAA 3 cut(s) 11, 581, 633
Tru9I TTAA 3 cut(s) 11, 581, 633
TscAI CASTG 2 cut(s) 96, 627
TseFI GTSAC 4 cut(s) 4, 161, 385, 959
TseI GCWGC 3 cut(s) 493, 815, 838
Tsp45I GTSAC 4 cut(s) 4, 161, 385, 959
TspDTI ATGAA 3 cut(s) 264, 609, 657
TspGWI ACGGA 3 cut(s) 95, 222, 404
TspRI CASTG 2 cut(s) 96, 627
VpaK11BI GGWCC 1 cut(s) 515
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 2 cut(s) 328, 660
XceI RCATGY 1 cut(s) 762
XhoI CTCGAG 1 cut(s) 244
XspI CTAG 3 cut(s) 477, 1044, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.