Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

10986806 .. 11004537

Gene Structure 17732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG061300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCGGGCAGCTTTACAGTTACCTCCAGACCAAAGGCAGAATCCACCTGCACTTCCAATGCATCTGGTAGATGTGATCGGTGGTGGTGATGGTGGTGTACAAGCATTTCCTGAAGCGTCTGGTATGTACTCAAAGATTACTCCTGGAATACCAGCAGCAAGTAAATCATTGGATAGTTCTGATGCATGTGTGACTGTTCTTTGTATTAAACTTGCTACGTGGTGGCCATGGGATGAACTCTCATCAAGCAAAGTTGTTGGAGAACGTGATGCAGCTAAGACTGTTGAAACTGATGCTATTCCTGCTCTTCAGAAACTGCAGAAGAAGAAAGGAAGAGAACTACAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.54

Weight (kDa)

8.6

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	55
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	132, 293
AfaI	GTAC	2 cut(s)	99, 128
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	11, 275
AluI	AGCT	2 cut(s)	11, 275
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	3 cut(s)	8, 155, 272
AsuHPI	GGTGA	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	226
BbvI	GCAGC	3 cut(s)	20, 167, 284
BccI	CCATC	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	55
BisI	GCNGC	3 cut(s)	9, 156, 273
BlsI	GCNGC	3 cut(s)	10, 157, 274
Bme1390I	CCNGG	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	4 cut(s)	70, 172, 259, 283
BpmI	CTGGAG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	20, 167, 284
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	18, 196, 283
Bst6I	CTCTTC	2 cut(s)	312, 328
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	20, 167, 284
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	316
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	98, 127
CviAII	CATG	2 cut(s)	186, 228
CviJI	RGCY	3 cut(s)	11, 226, 275
CviKI_1	RGCY	3 cut(s)	11, 226, 275
CviQI	GTAC	2 cut(s)	98, 127
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	224
Eam1104I	CTCTTC	2 cut(s)	312, 328
EarI	CTCTTC	2 cut(s)	312, 328
Eco130I	CCWWGG	1 cut(s)	227
Eco57I	CTGAAG	2 cut(s)	132, 293
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	2 cut(s)	63, 187
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	189, 231
FaiI	YATR	3 cut(s)	125, 187, 229
FatI	CATG	2 cut(s)	185, 227
Fnu4HI	GCNGC	3 cut(s)	9, 156, 273
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	9, 156, 273
GluI	GCNGC	3 cut(s)	9, 156, 273
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	226
HgaI	GACGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	189, 231
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	181, 312
Hpy188III	TCNNGA	2 cut(s)	26, 110
Hpy8I	GTNNAC	1 cut(s)	98
HpyCH4III	ACNGT	3 cut(s)	18, 196, 283
HpyCH4IV	ACGT	2 cut(s)	218, 265
HpyCH4V	TGCA	5 cut(s)	50, 61, 185, 272, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	218, 265
Hsp92II	CATG	2 cut(s)	189, 231
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	312
LpnPI	CCDG	9 cut(s)	39, 50, 60, 105, 123, 129, 156, 165, 315
Lsp1109I	GCAGC	3 cut(s)	20, 167, 284
LweI	GCATC	4 cut(s)	70, 172, 259, 283
MaeII	ACGT	2 cut(s)	218, 265
MaeIII	GTNAC	2 cut(s)	18, 190
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	299, 334, 337, 345
MlsI	TGGCCA	1 cut(s)	226
MluNI	TGGCCA	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	226
Mph1103I	ATGCAT	2 cut(s)	63, 187
MscI	TGGCCA	1 cut(s)	226
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	189, 231
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	2 cut(s)	63, 187
NspI	RCATGY	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	10, 157, 274
Ppu21I	YACGTR	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	99, 128
RsaNI	GTAC	2 cut(s)	98, 127
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	9, 156, 273
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	6 cut(s)	13, 25, 49, 221, 268, 277
SfaNI	GCATC	4 cut(s)	70, 172, 259, 283
SfcI	CTRYAG	1 cut(s)	317
SsiI	CCGC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	3 cut(s)	18, 196, 283
TaiI	ACGT	2 cut(s)	221, 268
TatI	WGTACW	2 cut(s)	97, 126
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	8, 155, 272
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	249
XceI	RCATGY	1 cut(s)	189
Zsp2I	ATGCAT	2 cut(s)	63, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.