Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

33047655 .. 33051979

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAGAGGCCGTCCCGCGATACAAGGATCGGAAGACGTCTTGTACAGATCCACCTGCCCAATTTGGCTTCAACCTCGGCTGTTGCGGGGCCTCCGTTCGATTCTCTCCCTCATCCACCTCGGCTGTTGCGGGCCGCCGAACTCGGGGTTGGAGAGTCTATCACTCGTCCAGCAACCCGTCTCCGCCTCTCTCGCTCTCCGGTCTCGCAGTTCCGCCTCCGGGCTTCGAGGTATCTCACTATCTCCCTCTCCCTCTCCGTCTCCTACTCTTCTCCTCCTCCCGACTTCCTCGGCGAGTCGGCGACGGCTCCTCCTCTCCTCCGGTCCTCTTCTTCTTCTCTTCTCGAAGGTGATTGGAACACTGCATTGTATTCTAAGCGGATCAAAAGTGAAACGAAACTGAAAAGCATTGGAGTTTCAAGCTCTTTTAAGATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAACACCGGAACATCGTGACTCTTAATGGCAAGTTGGAATTCAAATTTCATCCAGTTGTCTTGTTGATTGGAGTCATTCTTCCTTATCAAATTACTTTGCCCTCTTTAGTTGCAATGGTGGAACTTTTTCATGGATCTTTTTATATCCCTCAATTTCAGGTTGCCGAGGGGGAGATTCCACTCGTGGTAGCTAAAGGAGAGGAGATAGCACGTTATAAAGGACTTGATCCGACGGAGCGTTTACTAATGTTAAAAGCACTCCAAGATGATGCATTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGGGAAAAGGGTGTTTGAACCTACCAAATGTCGGTTTTCGGTGGGAAACACTAGCAACCAATCTCGCGGAATTTCAGAAAGTTATGGATGAACTCTCATCAAGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACCGATGCTATTCCTGCTCTTGAGAAACTTCGAAGTTACAAGACGGCTGCCGGTGGATTCTCTGCTAAGCTCACTCAACAGCGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

379

Amino Acids

41.89

Weight (kDa)

9.7

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AarI	CACCTGC	1 cut(s)	63
AatII	GACGTC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	63
AccII	CGCG	2 cut(s)	18, 974
AciI	CCGC	9 cut(s)	16, 86, 130, 135, 184, 214, 379, 865, 974
AclWI	GGATC	5 cut(s)	35, 43, 389, 682, 761
AcsI	RAATTY	4 cut(s)	578, 584, 852, 977
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	3 cut(s)	144, 220, 938
AgsI	TTSAA	7 cut(s)	72, 420, 464, 524, 583, 925, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	3 cut(s)	423, 731, 1120
AluI	AGCT	3 cut(s)	423, 731, 1120
Alw26I	GTCTC	4 cut(s)	185, 208, 265, 879
AlwI	GGATC	5 cut(s)	35, 43, 389, 682, 761
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	8, 89, 132
ApeKI	GCWGC	2 cut(s)	1034, 1097
ApoI	RAATTY	4 cut(s)	578, 584, 852, 977
AseI	ATTAAT	1 cut(s)	825
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	3 cut(s)	89, 132, 324
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	1081
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	1021, 1084
BceAI	ACGGC	2 cut(s)	321, 1110
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	4 cut(s)	185, 208, 265, 879
BfaI	CTAG	1 cut(s)	959
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	3 cut(s)	135, 1035, 1098
BlpI	GCTNAGC	1 cut(s)	1116
BlsI	GCNGC	3 cut(s)	136, 1036, 1099
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	89, 132, 324
BmiI	GGNNCC	2 cut(s)	90, 309
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	4 cut(s)	799, 820, 1021, 1045
BpiI	GAAGAC	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	1116
Bpu14I	TTCGAA	1 cut(s)	1081
BpuEI	CTTGAG	1 cut(s)	1091
BpuMI	CCSGG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	5 cut(s)	75, 119, 289, 447, 705
BsaWI	WCCGGW	3 cut(s)	199, 321, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 220, 938
Bse118I	RCCGGY	1 cut(s)	1100
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	3 cut(s)	474, 534, 660
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	75, 119, 289, 447, 705
BseGI	GGATG	3 cut(s)	112, 589, 1000
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	144, 220, 938
BseMI	GCAATG	3 cut(s)	474, 534, 660
BseNI	ACTGG	1 cut(s)	593
BseRI	GAGGAG	7 cut(s)	264, 267, 300, 303, 308, 755, 897
BseXI	GCAGC	2 cut(s)	1021, 1084
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	18, 974
BshFI	GGCC	3 cut(s)	10, 91, 134
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	5 cut(s)	200, 220, 322, 547, 1101
BslI	CCNNNNNNNGG	3 cut(s)	144, 220, 938
BsmAI	GTCTC	4 cut(s)	185, 208, 265, 879
BsmBI	CGTCTC	3 cut(s)	185, 265, 879
BsnI	GGCC	3 cut(s)	10, 91, 134
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	1081
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
Bsp1720I	GCTNAGC	1 cut(s)	1116
Bsp19I	CCATGG	1 cut(s)	447
BspACI	CCGC	9 cut(s)	16, 86, 130, 135, 184, 214, 379, 865, 974
BspANI	GGCC	3 cut(s)	10, 91, 134
BspFNI	CGCG	2 cut(s)	18, 974
BspLI	GGNNCC	2 cut(s)	90, 309
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	5 cut(s)	35, 43, 389, 682, 761
BspT104I	TTCGAA	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	208
BsrDI	GCAATG	3 cut(s)	474, 534, 660
BsrFI	RCCGGY	1 cut(s)	1100
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	1100
BssECI	CCNNGG	5 cut(s)	75, 119, 289, 447, 705
BssMI	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
BssNI	GRCGYC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	722
Bst6I	CTCTTC	3 cut(s)	274, 334, 345
BstACI	GRCGYC	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	1081
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	375, 1038, 1116
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	112, 589, 1000
BstFNI	CGCG	2 cut(s)	18, 974
BstKTI	GATC	6 cut(s)	30, 51, 384, 502, 677, 769
BstMAI	GTCTC	4 cut(s)	185, 208, 265, 879
BstMBI	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 1064
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	18, 974
BstV1I	GCAGC	2 cut(s)	1021, 1084
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	48, 674
BstYI	RGATCY	2 cut(s)	48, 674
BsuRI	GGCC	3 cut(s)	10, 91, 134
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	3 cut(s)	112, 589, 1000
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	1100
Cfr13I	GGNCC	3 cut(s)	89, 132, 324
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	2 cut(s)	448, 671
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	3 cut(s)	375, 1038, 1116
DpnI	GATC	6 cut(s)	29, 50, 383, 501, 676, 768
DpnII	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
Eam1104I	CTCTTC	3 cut(s)	274, 334, 345
EarI	CTCTTC	3 cut(s)	274, 334, 345
EciI	GGCGGA	2 cut(s)	173, 203
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	814
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	3 cut(s)	185, 265, 879
FaeI	CATG	2 cut(s)	451, 674
FaiI	YATR	7 cut(s)	449, 539, 672, 684, 756, 822, 992
FatI	CATG	2 cut(s)	447, 670
FauI	CCCGC	3 cut(s)	23, 79, 123
Fnu4HI	GCNGC	3 cut(s)	135, 1035, 1098
FokI	GGATG	3 cut(s)	99, 576, 1007
Fsp4HI	GCNGC	3 cut(s)	135, 1035, 1098
FspBI	CTAG	1 cut(s)	959
GluI	GCNGC	3 cut(s)	135, 1035, 1098
HaeIII	GGCC	3 cut(s)	10, 91, 134
HapII	CCGG	5 cut(s)	200, 220, 322, 547, 1101
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	2 cut(s)	451, 674
HinfI	GANTC	8 cut(s)	101, 155, 296, 452, 559, 612, 715, 1107
HpaII	CCGG	5 cut(s)	200, 220, 322, 547, 1101
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	782
Hpy188I	TCNGA	4 cut(s)	32, 771, 837, 984
Hpy188III	TCNNGA	4 cut(s)	281, 344, 556, 1070
Hpy8I	GTNNAC	1 cut(s)	782
Hpy99I	CGWCG	2 cut(s)	307, 775
HpyAV	CCTTC	2 cut(s)	341, 470
HpyCH4IV	ACGT	3 cut(s)	37, 751, 1027
HpyCH4V	TGCA	5 cut(s)	365, 491, 653, 812, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 1064
HpyF3I	CTNAG	3 cut(s)	375, 1038, 1116
HpySE526I	ACGT	3 cut(s)	37, 751, 1027
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	451, 674
Kzo9I	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
LmnI	GCTCC	2 cut(s)	313, 775
Lsp1109I	GCAGC	2 cut(s)	1021, 1084
LweI	GCATC	4 cut(s)	799, 820, 1021, 1045
MaeI	CTAG	1 cut(s)	959
MaeII	ACGT	3 cut(s)	37, 751, 1027
MaeIII	GTNAC	2 cut(s)	556, 1085
MalI	GATC	6 cut(s)	29, 50, 383, 501, 676, 768
MboI	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
MboII	GAAGA	9 cut(s)	16, 45, 261, 321, 324, 327, 332, 611, 849
MflI	RGATCY	2 cut(s)	48, 674
MluCI	AATT	8 cut(s)	61, 439, 578, 584, 630, 692, 852, 977
MlyI	GAGTC	4 cut(s)	164, 305, 553, 621
MmeI	TCCRAC	3 cut(s)	130, 555, 794
Mph1103I	ATGCAT	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	5 cut(s)	429, 438, 564, 791, 825
MspI	CCGG	5 cut(s)	200, 220, 322, 547, 1101
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	18, 974
MwoI	GCNNNNNNNGC	2 cut(s)	192, 1064
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	447
NdeII	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
NlaIII	CATG	2 cut(s)	451, 674
NlaIV	GGNNCC	2 cut(s)	90, 309
NmeAIII	GCCGAG	4 cut(s)	56, 100, 270, 730
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	814
NspV	TTCGAA	1 cut(s)	1081
PaqCI	CACCTGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	4 cut(s)	101, 452, 715, 1107
PkrI	GCNGC	3 cut(s)	136, 1036, 1099
PleI	GAGTC	4 cut(s)	163, 304, 553, 620
PpsI	GAGTC	4 cut(s)	163, 304, 553, 620
PshBI	ATTAAT	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	756
PspN4I	GGNNCC	2 cut(s)	90, 309
PspPI	GGNCC	3 cut(s)	89, 132, 324
PsuI	RGATCY	2 cut(s)	48, 674
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	5 cut(s)	429, 438, 564, 791, 825
SatI	GCNGC	3 cut(s)	135, 1035, 1098
Sau3AI	GATC	6 cut(s)	27, 48, 381, 499, 674, 766
Sau96I	GGNCC	3 cut(s)	89, 132, 324
SchI	GAGTC	4 cut(s)	164, 305, 553, 621
ScrFI	CCNGG	1 cut(s)	221
SfaNI	GCATC	4 cut(s)	799, 820, 1021, 1045
SfuI	TTCGAA	1 cut(s)	1081
SinI	GGWCC	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
Sse9I	AATT	8 cut(s)	61, 439, 578, 584, 630, 692, 852, 977
SsiI	CCGC	9 cut(s)	16, 86, 130, 135, 184, 214, 379, 865, 974
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	447
TaiI	ACGT	3 cut(s)	40, 754, 1030
TaqI	TCGA	5 cut(s)	99, 227, 345, 502, 1081
TasI	AATT	8 cut(s)	61, 439, 578, 584, 630, 692, 852, 977
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	101, 452, 715, 1107
Tru1I	TTAA	5 cut(s)	429, 438, 564, 791, 825
Tru9I	TTAA	5 cut(s)	429, 438, 564, 791, 825
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	1034, 1097
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	6 cut(s)	17, 444, 578, 659, 849, 1011
TspGWI	ACGGA	3 cut(s)	84, 247, 788
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	324
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	4 cut(s)	578, 584, 852, 977
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	1 cut(s)	959
ZraI	GACGTC	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.