Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Reverse (-)

34307503 .. 34309411

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATCTTTTTATATCCCTCAATTTCAGGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCGAGAGATGCCACTGGATGCAATTGCAAAGGAATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGATTGTGGACCTTCTTTGTCAACCGTACTTCTCGGACGGGGCTCAAGTACCGATTTGAGAGAGGAGATAGCACGTTATAAAGGACTTGATCCGACGGAGCGTTTACTAATGTTAAAAGCACTCTGTGAACTCCAAGCCGATCAAGATGATGCATTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

160

Amino Acids

17.79

Weight (kDa)

5.36

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
Acc16I	TGCGCA	1 cut(s)	61
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	12, 239
AcsI	RAATTY	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	183, 205
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	54, 119, 140, 443
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	12, 239
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	348
AseI	ATTAAT	2 cut(s)	113, 321
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	146, 164
AsuII	TTCGAA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	375
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	146, 164
BmsI	GCATC	6 cut(s)	75, 85, 295, 316, 415, 439
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	100, 133
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	233, 393
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	4, 244, 295
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	12, 239
BspT104I	TTCGAA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	4, 244, 295
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	475
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	100, 133
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	7, 247, 298
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	4, 244, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	100, 133
BtsIMutI	CAGTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	146, 164
Csp6I	GTAC	2 cut(s)	182, 204
CviJI	RGCY	6 cut(s)	74, 122, 148, 198, 293, 314
CviKI_1	RGCY	6 cut(s)	74, 122, 148, 198, 293, 314
CviQI	GTAC	2 cut(s)	182, 204
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	6, 246, 297
DpnII	GATC	3 cut(s)	4, 244, 295
DraIII	CACNNNGTG	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	375
FaiI	YATR	3 cut(s)	14, 234, 318
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	107, 140
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	429
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	72
Hpy166II	GTNNAC	4 cut(s)	164, 177, 260, 284
Hpy188I	TCNGA	3 cut(s)	191, 249, 333
Hpy188III	TCNNGA	3 cut(s)	78, 299, 464
Hpy8I	GTNNAC	4 cut(s)	164, 177, 260, 284
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	177, 471
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	4 cut(s)	36, 67, 229, 421
HpyCH4V	TGCA	6 cut(s)	43, 98, 104, 308, 405, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	4 cut(s)	36, 67, 229, 421
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	4, 244, 295
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	13, 77, 399, 471
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	6 cut(s)	75, 85, 295, 316, 415, 439
MaeII	ACGT	4 cut(s)	36, 67, 229, 421
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	3 cut(s)	6, 246, 297
MboI	GATC	3 cut(s)	4, 244, 295
MboII	GAAGA	1 cut(s)	345
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	5 cut(s)	22, 99, 110, 114, 348
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	29, 211, 371, 384
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	3 cut(s)	113, 269, 321
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	3 cut(s)	4, 244, 295
NsbI	TGCGCA	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	37
PshBI	ATTAAT	2 cut(s)	113, 321
PsiI	TTATAA	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	146, 164
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	183, 205
RsaNI	GTAC	2 cut(s)	182, 204
SaqAI	TTAA	3 cut(s)	113, 269, 321
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	4, 244, 295
Sau96I	GGNCC	2 cut(s)	146, 164
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	8 cut(s)	32, 39, 70, 76, 169, 232, 424, 482
SfaNI	GCATC	6 cut(s)	75, 85, 295, 316, 415, 439
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	199, 464
SmoI	CTYRAG	2 cut(s)	199, 464
Sse9I	AATT	5 cut(s)	22, 99, 110, 114, 348
SsiI	CCGC	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	4 cut(s)	39, 70, 232, 424
TaqI	TCGA	1 cut(s)	475
TasI	AATT	5 cut(s)	22, 99, 110, 114, 348
Tru1I	TTAA	3 cut(s)	113, 269, 321
Tru9I	TTAA	3 cut(s)	113, 269, 321
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	164
VspI	ATTAAT	2 cut(s)	113, 321
XapI	RAATTY	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.