Rh2CG403200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002118
Physical Location & Seq
Forward (+)
54895202 .. 54896763
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG403200.1

Sequence Viewer

Length: 339 bp
ATGGCGGAAGTGGTCAATTATGACAAACTGGGAATACCAGCAGCAAGTAAAACATTGGATAGTTCTGATGCATGTGTGACTGTTCTTTGTATTAAACTTGCTACGTGGTGGCCATGGGATGAACTCTCATCAAGCAAAGTTGCTGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCAGAAGAAGAAAGGAAGAGAACTAAAAAAGAAACGAAGGCAAGAGAGGCAGCAGAATCTTTTAACAAATTTTTATGGTGCTAGAATTACACGTTCCTGTCACAACCATAGGCGTGCCAATTATATATTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

112

Amino Acids

12.79

Weight (kDa)

9.64

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 1 cut(s) 173
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 41, 158, 253
ApoI RAATTY 1 cut(s) 271
BalI TGGCCA 1 cut(s) 112
BbvI GCAGC 3 cut(s) 53, 145, 265
BfaI CTAG 1 cut(s) 285
BisI GCNGC 3 cut(s) 42, 159, 254
BlsI GCNGC 3 cut(s) 43, 160, 255
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 3 cut(s) 58, 145, 169
BmuI ACTGGG 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 215
BsaAI YACGTR 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 3 cut(s) 53, 145, 265
BshFI GGCC 1 cut(s) 112
BsnI GGCC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 113
BssT1I CCWWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 188, 250
BstNSI RCATGY 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 53, 145, 265
BsuRI GGCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 318
CviAII CATG 2 cut(s) 72, 114
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
DdeI CTNAG 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 75, 117
FaiI YATR 8 cut(s) 21, 73, 115, 279, 312, 327, 329, 337
FatI CATG 2 cut(s) 71, 113
Fnu4HI GCNGC 3 cut(s) 42, 159, 254
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 42, 159, 254
FspBI CTAG 1 cut(s) 285
GluI GCNGC 3 cut(s) 42, 159, 254
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 112
Hin1II CATG 2 cut(s) 75, 117
HinfI GANTC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 67, 207
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 3 cut(s) 104, 151, 295
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 250
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 3 cut(s) 104, 151, 295
Hsp92II CATG 2 cut(s) 75, 117
LpnPI CCDG 5 cut(s) 14, 51, 129, 201, 313
Lsp1109I GCAGC 3 cut(s) 53, 145, 265
LweI GCATC 3 cut(s) 58, 145, 169
MaeI CTAG 1 cut(s) 285
MaeII ACGT 3 cut(s) 104, 151, 295
MaeIII GTNAC 2 cut(s) 76, 302
MboII GAAGA 3 cut(s) 220, 223, 231
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 4 cut(s) 16, 271, 288, 322
MluNI TGGCCA 1 cut(s) 112
MnlI CCTC 1 cut(s) 243
Mox20I TGGCCA 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 73
MscI TGGCCA 1 cut(s) 112
MseI TTAA 2 cut(s) 93, 266
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 188, 250
NcoI CCATGG 1 cut(s) 113
NlaIII CATG 2 cut(s) 75, 117
NmuCI GTSAC 2 cut(s) 76, 302
NsiI ATGCAT 1 cut(s) 73
NspI RCATGY 1 cut(s) 75
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 43, 160, 255
Ppu21I YACGTR 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 2 cut(s) 93, 266
SatI GCNGC 3 cut(s) 42, 159, 254
SetI ASST 3 cut(s) 107, 154, 298
SfaNI GCATC 3 cut(s) 58, 145, 169
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 16, 271, 288, 322
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 3 cut(s) 107, 154, 298
TasI AATT 4 cut(s) 16, 271, 288, 322
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 93, 266
Tru9I TTAA 2 cut(s) 93, 266
TseFI GTSAC 2 cut(s) 76, 302
TseI GCWGC 3 cut(s) 41, 158, 253
Tsp45I GTSAC 2 cut(s) 76, 302
TspDTI ATGAA 1 cut(s) 135
XapI RAATTY 1 cut(s) 271
XceI RCATGY 1 cut(s) 75
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.