Rh3CG093200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002118
Physical Location & Seq
Reverse (-)
7294268 .. 7299597
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG093200.1

Sequence Viewer

Length: 531 bp
ATGAAGAGGGCCTCCGTTCGATTCTCTCCCTCATCCACCTCGGTTGTTGCAGGGCCGTCGAACTCGGGGTTGGAGAGTCTATCACTCTGTCCAGCAACCCGTCTCCGCCTCTCTCGCTCTCCGGTCTCAGAGTTCCACCTCCAGGCTCGAGCTCAGCCCTTGAGGCATGATCAGTTGCTGCCTTGCTGGGTTATTCACTCCGGTCACTCCACCGAATCTAGGATGTTAAAGAGGAACTGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTATCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACTTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

9.83

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 106, 346
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 142, 219
AgsI TTSAA 2 cut(s) 271, 481
AjnI CCWGG 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 152, 267
AluI AGCT 2 cut(s) 152, 267
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 3 cut(s) 107, 130, 360
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 2 cut(s) 64, 147
AoxI GGCC 3 cut(s) 9, 53, 252
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 333
AseI ATTAAT 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 9, 53, 252
AvaI CYCGRG 2 cut(s) 64, 147
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 107, 130, 360
BfaI CTAG 3 cut(s) 219, 515, 529
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 179
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 2 cut(s) 64, 147
BmgT120I GGNCC 3 cut(s) 9, 53, 252
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 2 cut(s) 280, 301
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 2 cut(s) 121, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 219
Bse1I ACTGG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 32, 228
BseLI CCNNNNNNNGG 2 cut(s) 142, 219
BseMII CTCAG 2 cut(s) 141, 167
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 186
BshFI GGCC 3 cut(s) 11, 55, 254
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 2 cut(s) 64, 147
BsiSI CCGG 2 cut(s) 122, 201
BslI CCNNNNNNNGG 2 cut(s) 142, 219
BsmAI GTCTC 3 cut(s) 107, 130, 360
BsmBI CGTCTC 2 cut(s) 107, 360
BsnI GGCC 3 cut(s) 11, 55, 254
Bso31I GGTCTC 1 cut(s) 130
BsoBI CYCGRG 2 cut(s) 64, 147
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 2 cut(s) 106, 346
BspANI GGCC 3 cut(s) 11, 55, 254
BspCNI CTCAG 2 cut(s) 140, 166
BspTNI GGTCTC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 127, 153
BstF5I GGATG 2 cut(s) 32, 228
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 3 cut(s) 107, 130, 360
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 114, 163
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 458
BsuRI GGCC 3 cut(s) 11, 55, 254
BtsCI GGATG 2 cut(s) 32, 228
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 300, 509
CaiI CAGNNNCTG 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 9, 53, 252
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 1 cut(s) 167
CviJI RGCY 8 cut(s) 11, 55, 146, 152, 157, 254, 267, 299
CviKI_1 RGCY 8 cut(s) 11, 55, 146, 152, 157, 254, 267, 299
DdeI CTNAG 2 cut(s) 127, 153
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 152
Eco88I CYCGRG 2 cut(s) 64, 147
EcoICRI GAGCTC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 154
Esp3I CGTCTC 2 cut(s) 107, 360
FaeI CATG 1 cut(s) 170
FaiI YATR 5 cut(s) 168, 303, 393, 417, 424
FatI CATG 1 cut(s) 166
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 2 cut(s) 19, 235
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 3 cut(s) 219, 515, 529
GluI GCNGC 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 11, 55, 254
HapII CCGG 2 cut(s) 122, 201
Hin1II CATG 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 5 cut(s) 21, 76, 215, 244, 446
HpaII CCGG 2 cut(s) 122, 201
Hpy188I TCNGA 3 cut(s) 130, 249, 318
Hpy99I CGWCG 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 50, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 163
HpyF3I CTNAG 2 cut(s) 127, 153
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 8 cut(s) 36, 105, 128, 135, 155, 172, 214, 515
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 2 cut(s) 280, 301
MaeI CTAG 3 cut(s) 219, 515, 529
MaeIII GTNAC 2 cut(s) 203, 433
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 4 cut(s) 16, 283, 330, 463
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 333
MlyI GAGTC 2 cut(s) 85, 455
MmeI TCCRAC 1 cut(s) 51
MseI TTAA 2 cut(s) 227, 306
MspI CCGG 2 cut(s) 122, 201
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 114, 163
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 147
PfeI GAWTC 3 cut(s) 21, 215, 244
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 2 cut(s) 84, 454
PpsI GAGTC 2 cut(s) 84, 454
PshBI ATTAAT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 3 cut(s) 9, 53, 252
PspXI VCTCGAGB 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 178
SacI GAGCTC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 227, 306
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 3 cut(s) 9, 53, 252
SchI GAGTC 2 cut(s) 85, 455
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 154
SetI ASST 5 cut(s) 41, 141, 154, 269, 415
SfaNI GCATC 2 cut(s) 280, 301
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 147, 160
SmoI CTYRAG 2 cut(s) 147, 160
Sse9I AATT 1 cut(s) 333
SsiI CCGC 2 cut(s) 106, 346
SspMI CTAG 3 cut(s) 219, 515, 529
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 19, 59, 148, 449
TasI AATT 1 cut(s) 333
TfiI GAWTC 3 cut(s) 21, 215, 244
Tru1I TTAA 2 cut(s) 227, 306
Tru9I TTAA 2 cut(s) 227, 306
TscAI CASTG 2 cut(s) 300, 509
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 17, 276, 330
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 2 cut(s) 300, 509
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 3 cut(s) 219, 515, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.