Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Reverse (-)

28804808 .. 28807365

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGTTTGATAACCCCTAAAGATTCACTTGCTCAGCTTCACATTGCGCTTTTGAAGGATGGACAGAACACTCGCTTGAATAACCGAGTACTTGACTTGCGAACTCCGGCCAAACAGGGGATTTTCCGAATTCAGAGTCAAGTTCGAACTATCTTTGGGCAATTCTGGCTGTCCGAAGGGTCCAGAAACATTGTTTACCCAAACTTAAATGAAGCAAGAGATGACCTCTCATCAAGCAAAGTTGCTGGAGAACGTGATGCTGCTAAGACTATTAAAACTGATGCTATTCCTGCTCTCACGAAACTTCAGAAGGTTCAGCAACGGAGGTGGACTTCACAGTGGAGGAAGAAGATATACGGCTTGCGTCAGTCGAGTGAAAGTGTTCATGTTGGGCAGGTTCAGGGGAAACTGGTTGATTCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006422 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045202 GO:0046483 GO:0046686 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

141

Amino Acids

15.94

Weight (kDa)

10.31

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	55, 79
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	129
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	1 cut(s)	261
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	262
BmcAI	AGTACT	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	2 cut(s)	247, 271
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	117
BsnI	GGCC	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1720I	GCTNAGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	33, 264
BstF5I	GGATG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 290
BstV1I	GCAGC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	180
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	4 cut(s)	37, 110, 169, 360
CviKI_1	RGCY	4 cut(s)	37, 110, 169, 360
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	2 cut(s)	33, 264
EaeI	YGGCCR	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	389
FaiI	YATR	2 cut(s)	355, 387
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	3 cut(s)	23, 136, 416
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	196, 330
Hpy188I	TCNGA	5 cut(s)	128, 135, 175, 309, 421
Hpy188III	TCNNGA	2 cut(s)	183, 298
Hpy8I	GTNNAC	2 cut(s)	196, 330
HpyAV	CCTTC	3 cut(s)	49, 170, 304
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 290
HpyF3I	CTNAG	2 cut(s)	33, 264
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	47
LpnPI	CCDG	9 cut(s)	101, 120, 151, 196, 231, 303, 380, 386, 395
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	247, 271
MaeII	ACGT	1 cut(s)	253
MboII	GAAGA	2 cut(s)	358, 361
MluCI	AATT	2 cut(s)	129, 161
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	236, 318, 336
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	2 cut(s)	206, 273
MspI	CCGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	166, 290
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	23, 416
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	180
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	206, 273
SatI	GCNGC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	1 cut(s)	90
SchI	GAGTC	1 cut(s)	145
SetI	ASST	6 cut(s)	39, 228, 256, 315, 329, 399
SfaNI	GCATC	2 cut(s)	247, 271
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	2 cut(s)	129, 161
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	145, 371
TasI	AATT	2 cut(s)	129, 161
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	23, 416
Tru1I	TTAA	2 cut(s)	206, 273
Tru9I	TTAA	2 cut(s)	206, 273
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	225, 374
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.