Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Reverse (-)

23608256 .. 23613924

Gene Structure 5669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30480.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGGTTTGGTAACCCCAAACGATTCACTTGCTCAGCTTCACATTGCCCTTTTGAAGGGAACACCACCAGCGAGTAAAACACTGGATGGTTCTGATGCATGGGTGACTGTTCTTTGTAAGAAACTTGTAACGTGGTGGCCATGGGTTGCTGAGGGGAAGATTCCACTTGTGGTAGCTAAAGGAGAGGAAATATCACGCTATAAAGGACTTGATCCGACAGAGCGTCTACTTATGTTAAAAGCACTCTGTGAACTCCGAGCCGATCAAGATGATGCAGTGGCTTATATTAATGATGCCCTGAAAGAAGGAACTGAAATTTCTTCATTCCGCAAGGATAAGATAGGAGGAGACGAAAAGGGAACTTCTTATTGGTATGATGGAAATACAATAATTGGTCATAGATTATACAAGGAAGTAACTGTCATCGAGTCGAAGAAAAATGTTAAGGGGAAAGGGGGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACAGTAGCAACCAACCTCGATGAATTTCAGAAAGTTATAGATGAACTCTCATCAAGCAAAGTTGCAGGAGAACGTGATGCCGCTAAGAGTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCAGAAGAAGAAAGAAAGGGAACTGAAAAAGAAACTAAGTCAAGAGAGGCAGCAGAATCTTTTAACAAACTTTTATGGTGCTGGAATTACACGTTCCTGTCGCAACCGTAGGACTGTCAACTACACATTTGATGATTATGACCGGGTAATTCATGAGGCTATAAAAGTCACAAATAAGAGGAAAACTACTGAAGAGAAAGTGCAAGAAAGGAAGAGTAGAAGGAATGACACAGCTAACAATGATGCCCCAGAAAGAGACACCAACTCAGAATATTCAGATAAAGAAAGTCACTCCGCAAACAGTGATAATAAGGATTCTGGTAAGAATGATGATGGGGATTCTGGTTACCACTCTAGTAACACTGAAAGTGACATGCTTGGAGATGCTGGTGATGACGAGGATGATAACAATTGGGATGATGGCACCAAGGATGAGGACAATGAAGAAGAAGAAGAAGATGGTGATCTCAGTGACAAACGCAGTTCTAAGCAAGTGAAGAACAATGCTCAGACTGATGACATGTCCCAAAAATGGCCAGCTTGTGGTGTGCGGTGGAGTTCAAGACTAGCTGGAGGCACTAATCGTCAAGTTGTGGAAAACAGGAACTCTGGTGCTAAGAATAGGTTGAGACAAAGACCTGTCTGCAACTCTGCCCTTGACTCTGTTGTGATCCAAGACTCTGAGGATGAAAACTCAGAGGGACATGAAAACAGCCAGACTTTGGAGCACAAAAACCCATCTTCAGAAACTGATCCGGAAGAAGTCAGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

465

Amino Acids

51.98

Weight (kDa)

4.95

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1040
AccB7I	CCANNNNNTGG	2 cut(s)	1160, 1339
AccI	GTMKAC	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	1372
AciI	CCGC	4 cut(s)	328, 573, 912, 1168
AclWI	GGATC	3 cut(s)	206, 1282, 1364
AcoI	YGGCCR	2 cut(s)	137, 1151
AcsI	RAATTY	2 cut(s)	315, 515
AcuI	CTGAAG	3 cut(s)	602, 828, 1344
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	55, 1149, 1160, 1339
AflIII	ACRYGT	2 cut(s)	707, 1137
AgsI	TTSAA	4 cut(s)	55, 463, 587, 1179
AhdI	GACNNNNNGTC	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AluBI	AGCT	6 cut(s)	37, 176, 851, 1157, 1187, 1392
AluI	AGCT	6 cut(s)	37, 176, 851, 1157, 1187, 1392
Alw21I	GWGCWC	1 cut(s)	1347
Alw26I	GTCTC	3 cut(s)	342, 867, 1240
AlwI	GGATC	3 cut(s)	206, 1282, 1364
AlwNI	CAGNNNCTG	1 cut(s)	1367
Aor13HI	TCCGGA	1 cut(s)	1372
AoxI	GGCC	2 cut(s)	137, 1151
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	2 cut(s)	315, 515
AseI	ATTAAT	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	115, 1019, 1091
BalI	TGGCCA	2 cut(s)	139, 1153
BanI	GGYRCC	1 cut(s)	1040
Bbv12I	GWGCWC	1 cut(s)	1347
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	6 cut(s)	80, 371, 944, 1031, 1070, 1363
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	342, 867, 1240
BfaI	CTAG	3 cut(s)	972, 1184, 1393
BisI	GCNGC	2 cut(s)	573, 668
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	2 cut(s)	574, 669
Bme1390I	CCNGG	1 cut(s)	761
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	7 cut(s)	85, 262, 283, 559, 583, 850, 991
BpmI	CTGGAG	1 cut(s)	1209
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	1080
BsaJI	CCNNGG	2 cut(s)	140, 1044
BsaWI	WCCGGW	1 cut(s)	1372
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 1149, 1160, 1339
Bse1I	ACTGG	2 cut(s)	87, 484
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	1080
BseAI	TCCGGA	1 cut(s)	1372
BseDI	CCNNGG	2 cut(s)	140, 1044
BseGI	GGATG	5 cut(s)	91, 1024, 1039, 1054, 1309
BseJI	GATNNNNATC	1 cut(s)	1080
BseLI	CCNNNNNNNGG	4 cut(s)	55, 1149, 1160, 1339
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	7 cut(s)	47, 141, 897, 1099, 1139, 1290, 1326
BseNI	ACTGG	2 cut(s)	87, 484
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	679
BshFI	GGCC	2 cut(s)	139, 1153
BshNI	GGYRCC	1 cut(s)	1040
BsiHKAI	GWGCWC	1 cut(s)	1347
BsiSI	CCGG	2 cut(s)	760, 1373
BslFI	GGGAC	2 cut(s)	1126, 1332
BslI	CCNNNNNNNGG	4 cut(s)	55, 1149, 1160, 1339
BsmAI	GTCTC	3 cut(s)	342, 867, 1240
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	1126, 1332
BsnI	GGCC	2 cut(s)	139, 1153
Bsp1286I	GDGCHC	1 cut(s)	1347
Bsp13I	TCCGGA	1 cut(s)	1372
Bsp143I	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
Bsp1720I	GCTNAGC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	140
BspACI	CCGC	4 cut(s)	328, 573, 912, 1168
BspANI	GGCC	2 cut(s)	139, 1153
BspCNI	CTCAG	7 cut(s)	46, 142, 896, 1098, 1138, 1291, 1325
BspEI	TCCGGA	1 cut(s)	1372
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	1 cut(s)	1042
BspPI	GGATC	3 cut(s)	206, 1282, 1364
BspT107I	GGYRCC	1 cut(s)	1040
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	87, 484
BssECI	CCNNGG	2 cut(s)	140, 1044
BssMI	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
BssT1I	CCWWGG	2 cut(s)	140, 1044
Bst4CI	ACNGT	6 cut(s)	109, 421, 496, 725, 733, 920
Bst6I	CTCTTC	2 cut(s)	804, 824
BstC8I	GCNNGC	1 cut(s)	1155
BstDSI	CCRYGG	1 cut(s)	140
BstEII	GGTNACC	2 cut(s)	10, 962
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	5 cut(s)	91, 1024, 1039, 1054, 1309
BstKTI	GATC	5 cut(s)	214, 265, 1084, 1290, 1372
BstMAI	GTCTC	3 cut(s)	342, 867, 1240
BstMBI	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNSI	RCATGY	2 cut(s)	994, 1141
BstPI	GGTNACC	2 cut(s)	10, 962
BstSCI	CCNGG	1 cut(s)	759
BstV1I	GCAGC	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	139, 1153
BtgI	CCRYGG	1 cut(s)	140
BtsCI	GGATG	5 cut(s)	91, 1024, 1039, 1054, 1309
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	7 cut(s)	80, 282, 491, 925, 978, 1093, 1390
Cac8I	GCNNGC	1 cut(s)	1155
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	1 cut(s)	769
CseI	GACGC	1 cut(s)	212
CviAII	CATG	6 cut(s)	99, 141, 770, 991, 1138, 1322
DpnI	GATC	5 cut(s)	213, 264, 1083, 1289, 1371
DpnII	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
DraIII	CACNNNGTG	1 cut(s)	248
DriI	GACNNNNNGTC	1 cut(s)	222
EaeI	YGGCCR	2 cut(s)	137, 1151
Eam1104I	CTCTTC	2 cut(s)	804, 824
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	2 cut(s)	804, 824
Eco130I	CCWWGG	2 cut(s)	140, 1044
Eco57I	CTGAAG	3 cut(s)	602, 828, 1344
Eco91I	GGTNACC	2 cut(s)	10, 962
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO65I	GGTNACC	2 cut(s)	10, 962
EcoT14I	CCWWGG	2 cut(s)	140, 1044
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	140, 1044
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	6 cut(s)	102, 144, 773, 994, 1141, 1325
FaqI	GGGAC	2 cut(s)	1126, 1332
FatI	CATG	6 cut(s)	98, 140, 769, 990, 1137, 1321
FblI	GTMKAC	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	573, 668
FokI	GGATG	5 cut(s)	98, 1031, 1046, 1061, 1316
Fsp4HI	GCNGC	2 cut(s)	573, 668
FspBI	CTAG	3 cut(s)	972, 1184, 1393
GluI	GCNGC	2 cut(s)	573, 668
GsuI	CTGGAG	1 cut(s)	1209
HaeIII	GGCC	2 cut(s)	139, 1153
HapII	CCGG	2 cut(s)	760, 1373
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	6 cut(s)	102, 144, 773, 994, 1141, 1325
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	8 cut(s)	23, 160, 428, 673, 932, 956, 1277, 1295
HpaII	CCGG	2 cut(s)	760, 1373
HphI	GGTGA	3 cut(s)	115, 1019, 1091
Hpy166II	GTNNAC	3 cut(s)	227, 251, 736
Hpy188III	TCNNGA	6 cut(s)	266, 608, 659, 770, 1179, 1373
Hpy8I	GTNNAC	3 cut(s)	227, 251, 736
HpyAV	CCTTC	3 cut(s)	49, 299, 831
HpyCH4III	ACNGT	6 cut(s)	109, 421, 496, 725, 733, 920
HpyCH4IV	ACGT	3 cut(s)	131, 565, 709
HpyCH4V	TGCA	5 cut(s)	98, 275, 557, 820, 1263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpySE526I	ACGT	3 cut(s)	131, 565, 709
Hsp92II	CATG	6 cut(s)	102, 144, 773, 994, 1141, 1325
Kpn2I	TCCGGA	1 cut(s)	1372
Kzo9I	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
LmnI	GCTCC	1 cut(s)	1342
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	7 cut(s)	85, 262, 283, 559, 583, 850, 991
MaeI	CTAG	3 cut(s)	972, 1184, 1393
MaeII	ACGT	3 cut(s)	131, 565, 709
MalI	GATC	5 cut(s)	213, 264, 1083, 1289, 1371
MboI	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
MfeI	CAATTG	1 cut(s)	1027
MhlI	GDGCHC	1 cut(s)	1347
MlsI	TGGCCA	2 cut(s)	139, 1153
MluCI	AATT	6 cut(s)	315, 390, 515, 702, 765, 1027
MluNI	TGGCCA	2 cut(s)	139, 1153
MlyI	GAGTC	3 cut(s)	437, 1271, 1289
MmeI	TCCRAC	1 cut(s)	239
Mox20I	TGGCCA	2 cut(s)	139, 1153
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	1372
MscI	TGGCCA	2 cut(s)	139, 1153
MseI	TTAA	4 cut(s)	236, 288, 444, 680
Msp20I	TGGCCA	2 cut(s)	139, 1153
MspI	CCGG	2 cut(s)	760, 1373
MspR9I	CCNGG	1 cut(s)	761
MunI	CAATTG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
NlaIII	CATG	6 cut(s)	102, 144, 773, 994, 1141, 1325
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	5 cut(s)	103, 784, 905, 986, 1088
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	994, 1141
PagI	TCATGA	1 cut(s)	769
PciI	ACATGT	1 cut(s)	1137
PfeI	GAWTC	5 cut(s)	23, 160, 673, 932, 956
PflMI	CCANNNNNTGG	2 cut(s)	1160, 1339
PkrI	GCNGC	2 cut(s)	574, 669
PleI	GAGTC	3 cut(s)	436, 1271, 1289
PpsI	GAGTC	3 cut(s)	436, 1271, 1289
PscI	ACATGT	1 cut(s)	1137
PshBI	ATTAAT	1 cut(s)	288
PspEI	GGTNACC	2 cut(s)	10, 962
PspN4I	GGNNCC	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	1367
SaqAI	TTAA	4 cut(s)	236, 288, 444, 680
SatI	GCNGC	2 cut(s)	573, 668
Sau3AI	GATC	5 cut(s)	211, 262, 1081, 1287, 1369
SchI	GAGTC	3 cut(s)	437, 1271, 1289
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	1347
SfaNI	GCATC	7 cut(s)	85, 262, 283, 559, 583, 850, 991
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	6 cut(s)	315, 390, 515, 702, 765, 1027
SsiI	CCGC	4 cut(s)	328, 573, 912, 1168
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	3 cut(s)	972, 1184, 1393
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	2 cut(s)	140, 1044
TaaI	ACNGT	6 cut(s)	109, 421, 496, 725, 733, 920
TaiI	ACGT	3 cut(s)	134, 568, 712
TaqI	TCGA	3 cut(s)	426, 431, 510
TasI	AATT	6 cut(s)	315, 390, 515, 702, 765, 1027
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	5 cut(s)	23, 160, 673, 932, 956
Tru1I	TTAA	4 cut(s)	236, 288, 444, 680
Tru9I	TTAA	4 cut(s)	236, 288, 444, 680
TscAI	CASTG	7 cut(s)	87, 282, 491, 925, 985, 1093, 1390
TseFI	GTSAC	5 cut(s)	103, 784, 905, 986, 1088
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	5 cut(s)	103, 784, 905, 986, 1088
TspDTI	ATGAA	7 cut(s)	312, 528, 549, 758, 1074, 1320, 1338
TspRI	CASTG	7 cut(s)	87, 282, 491, 925, 985, 1093, 1390
Van91I	CCANNNNNTGG	2 cut(s)	1160, 1339
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	2 cut(s)	315, 515
XceI	RCATGY	2 cut(s)	994, 1141
XmiI	GTMKAC	1 cut(s)	226
XspI	CTAG	3 cut(s)	972, 1184, 1393
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.