RchiOBHm_Chr3g0485791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002118
Physical Location & Seq
Forward (+)
32587275 .. 32589390
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45037

Sequence Viewer

Length: 201 bp
ATGGAGGCTTCTACAGCGGATTCTGAGGTCGTTGACGTGGAGGGGACCATGGTCACAGCGGTAGGCTTCGCTGCTGGGCCTGAGAGAATCATGAAGATCATGTCGGTTAGAGGACTCGCTTCTTCTGCTTTACAGTTACCTCCAGACCAAAGGCAAAAGCCACCTGCCCTTCCAATCTACCTGCCCCTAATTTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

6.97

Weight (kDa)

4.72

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 2 cut(s) 172, 189
AciI CCGC 2 cut(s) 17, 59
AjiI CACGTC 1 cut(s) 37
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 45, 77
AvaII GGWCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 58
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 2 cut(s) 172, 189
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 45, 77
BmiI GGNNCC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 15, 72
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 2 cut(s) 17, 59
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 16, 73
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 2 cut(s) 172, 189
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 24, 81
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 14, 125
BstPAI GACNNNNGTC 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 48
BtrI CACGTC 1 cut(s) 37
BveI ACCTGC 2 cut(s) 172, 189
CciI TCATGA 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 45, 77
CviAII CATG 3 cut(s) 49, 91, 100
CviJI RGCY 4 cut(s) 8, 66, 79, 160
CviKI_1 RGCY 4 cut(s) 8, 66, 79, 160
DdeI CTNAG 2 cut(s) 24, 81
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 52, 94, 103
FaiI YATR 3 cut(s) 50, 92, 101
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 48, 90, 99
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 79
Hin1II CATG 3 cut(s) 52, 94, 103
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 20, 87, 114
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 91, 143
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 125
HpyF3I CTNAG 2 cut(s) 24, 81
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 52, 94, 103
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 5 cut(s) 60, 93, 156, 177, 194
Lsp1109I GCAGC 1 cut(s) 58
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 52, 135
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 2 cut(s) 106, 114
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 4 cut(s) 19, 34, 104, 150
MspA1I CMGCKG 2 cut(s) 17, 59
MwoI GCNNNNNNNGC 2 cut(s) 14, 125
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 96
NlaIII CATG 3 cut(s) 52, 94, 103
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 52
PagI TCATGA 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 20, 87
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PshAI GACNNNNGTC 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 45, 77
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 2 cut(s) 45, 77
SchI GAGTC 1 cut(s) 108
SetI ASST 5 cut(s) 30, 39, 142, 166, 183
SfcI CTRYAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 45
Sse9I AATT 1 cut(s) 189
SsiI CCGC 2 cut(s) 17, 59
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 39
TasI AATT 1 cut(s) 189
TfiI GAWTC 2 cut(s) 20, 87
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.