Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

12445465 .. 12486399

Gene Structure 40935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG070000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTGCTGATCAATTAATTGCTGAAACACCTCCAGTAGTCCCGAGGGACTCGCTGGACACTCTGGAGTGTGCCATGTTGCCAACAACTAGGTATTACGACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGAATAGACTCAGAGGGCCAATGGTGTTTGAGATTGCAAAGGCTATGGCTTGGGTTCCAGTTGGAGCAGACAGGAATAAGACATATCTTCATCTTAACCAATGGATACCAGATGAACTTAAATTTGATCTGAACTGCCTTCTGTATACACATGGTAAGCTCTGCAGCAAGTGCATCAAGAAAGGAGGTAGCACTGGTAAGCAGCAAGAAAAGGAATACGAGGATATCAATTCCAACTTCATTTATTCGGCAGCTCGGCCCTTGAGGCATGATCAGTTGCTGCCTTGCTGGGTTATTCACTCCAGTCACTCCACCGAATCTTGGATGTTAAAGAGGAACTGTGTGAATCAGAGGGCCACAAATGAAAGCTTGAAGAGAATAAAGCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGACATAGATTATACAAGGCATGCCAGGATTTTACCAATTATTTATGTCAGTATAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031935 GO:0031936 GO:0032259 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035510 GO:0040029 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045815 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0080111 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1902275 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

255

Amino Acids

28.91

Weight (kDa)

8.67

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	338
AciI	CCGC	1 cut(s)	640
AcsI	RAATTY	2 cut(s)	314, 627
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	4 cut(s)	153, 352, 446, 561
AluI	AGCT	4 cut(s)	153, 352, 446, 561
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	654
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	4 cut(s)	180, 209, 449, 546
ApeKI	GCWGC	4 cut(s)	357, 394, 443, 472
ApoI	RAATTY	2 cut(s)	314, 627
AseI	ATTAAT	2 cut(s)	17, 600
AspS9I	GGNCC	4 cut(s)	180, 209, 450, 546
AsuNHI	GCTAGC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	369, 406, 455, 459
BccI	CCATC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	291
BclI	TGATCA	2 cut(s)	10, 463
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	90, 168
BfmI	CTRYAG	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	358, 395, 444, 473
BlsI	GCNGC	4 cut(s)	359, 396, 445, 474
Bme1390I	CCNGG	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	180, 209, 450, 546
BmiI	GGNNCC	2 cut(s)	181, 249
BmrFI	CCNGG	1 cut(s)	731
BmsI	GCATC	3 cut(s)	375, 574, 595
BmtI	GCTAGC	1 cut(s)	171
BoxI	GACNNNNGTC	1 cut(s)	105
BpmI	CTGGAG	4 cut(s)	18, 86, 139, 478
BpuEI	CTTGAG	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	4 cut(s)	35, 251, 391, 495
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	133, 522
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	4 cut(s)	35, 251, 391, 495
BseRI	GAGGAG	1 cut(s)	672
BseXI	GCAGC	4 cut(s)	369, 406, 455, 459
BseYI	CCCAGC	1 cut(s)	480
BshFI	GGCC	4 cut(s)	182, 211, 451, 548
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	43
BslFI	GGGAC	2 cut(s)	26, 62
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	26, 62
BsnI	GGCC	4 cut(s)	182, 211, 451, 548
BsoBI	CYCGRG	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	10, 319, 463
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	4 cut(s)	182, 211, 451, 548
BspCNI	CTCAG	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	181, 249
BspMAI	CTGCAG	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	35, 251, 391, 495
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	10, 319, 463
BssNAI	GTATAC	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	169, 727
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	133, 522
BstKTI	GATC	3 cut(s)	13, 322, 466
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	3 cut(s)	10, 319, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 457
BstNI	CCWGG	1 cut(s)	731
BstNSI	RCATGY	1 cut(s)	729
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	369, 406, 455, 459
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstZ17I	GTATAC	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	182, 211, 451, 548
BtsCI	GGATG	2 cut(s)	133, 522
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	2 cut(s)	384, 594
Cac8I	GCNNGC	2 cut(s)	169, 727
CaiI	CAGNNNCTG	1 cut(s)	472
Cfr13I	GGNCC	4 cut(s)	180, 209, 450, 546
CviAII	CATG	4 cut(s)	76, 344, 461, 726
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	12, 321, 465
DpnII	GATC	3 cut(s)	10, 319, 463
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Ecl136II	GAGCTC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	155
Eco32I	GATATC	2 cut(s)	161, 418
Eco53kI	GAGCTC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	729
EcoRV	GATATC	2 cut(s)	161, 418
EcoT38I	GRGCYC	1 cut(s)	155
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	4 cut(s)	79, 347, 464, 729
FaqI	GGGAC	2 cut(s)	26, 62
FatI	CATG	4 cut(s)	75, 343, 460, 725
FbaI	TGATCA	2 cut(s)	10, 463
FblI	GTMKAC	1 cut(s)	338
Fnu4HI	GCNGC	4 cut(s)	358, 395, 444, 473
FokI	GGATG	2 cut(s)	140, 529
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	4 cut(s)	358, 395, 444, 473
FspBI	CTAG	2 cut(s)	90, 168
GluI	GCNGC	4 cut(s)	358, 395, 444, 473
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	4 cut(s)	18, 86, 139, 478
HaeIII	GGCC	4 cut(s)	182, 211, 451, 548
Hin1II	CATG	4 cut(s)	79, 347, 464, 729
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	4 cut(s)	50, 201, 509, 538
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	4 cut(s)	206, 324, 543, 612
Hpy188III	TCNNGA	4 cut(s)	43, 65, 156, 370
Hpy8I	GTNNAC	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	5 cut(s)	189, 230, 357, 366, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 457
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	79, 347, 464, 729
Ksp22I	TGATCA	2 cut(s)	10, 463
Kzo9I	GATC	3 cut(s)	10, 319, 463
LmnI	GCTCC	3 cut(s)	150, 158, 257
Lsp1109I	GCAGC	4 cut(s)	369, 406, 455, 459
LweI	GCATC	3 cut(s)	375, 574, 595
MaeI	CTAG	2 cut(s)	90, 168
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	3 cut(s)	12, 321, 465
MboI	GATC	3 cut(s)	10, 319, 463
MboII	GAAGA	3 cut(s)	272, 577, 624
MfeI	CAATTG	2 cut(s)	111, 184
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	8 cut(s)	14, 18, 111, 184, 314, 421, 627, 742
MlyI	GAGTC	2 cut(s)	44, 195
MmeI	TCCRAC	2 cut(s)	235, 450
MseI	TTAA	5 cut(s)	17, 288, 312, 521, 600
MspR9I	CCNGG	1 cut(s)	731
MunI	CAATTG	2 cut(s)	111, 184
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	2 cut(s)	363, 457
NdeII	GATC	3 cut(s)	10, 319, 463
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	4 cut(s)	79, 347, 464, 729
NlaIV	GGNNCC	2 cut(s)	181, 249
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	729
PaeI	GCATGC	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	509, 538
PkrI	GCNGC	4 cut(s)	359, 396, 445, 474
PleI	GAGTC	2 cut(s)	44, 195
PpsI	GAGTC	2 cut(s)	44, 195
PshAI	GACNNNNGTC	1 cut(s)	105
PshBI	ATTAAT	2 cut(s)	17, 600
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	181, 249
PspPI	GGNCC	4 cut(s)	180, 209, 450, 546
PstI	CTGCAG	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	155
SaqAI	TTAA	5 cut(s)	17, 288, 312, 521, 600
SatI	GCNGC	4 cut(s)	358, 395, 444, 473
Sau3AI	GATC	3 cut(s)	10, 319, 463
Sau96I	GGNCC	4 cut(s)	180, 209, 450, 546
SchI	GAGTC	2 cut(s)	44, 195
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	7 cut(s)	34, 95, 155, 354, 382, 448, 563
SfaNI	GCATC	3 cut(s)	375, 574, 595
SfcI	CTRYAG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SphI	GCATGC	1 cut(s)	729
Sse9I	AATT	8 cut(s)	14, 18, 111, 184, 314, 421, 627, 742
SsiI	CCGC	1 cut(s)	640
SspMI	CTAG	2 cut(s)	90, 168
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	533
TasI	AATT	8 cut(s)	14, 18, 111, 184, 314, 421, 627, 742
TfiI	GAWTC	2 cut(s)	509, 538
Tru1I	TTAA	5 cut(s)	17, 288, 312, 521, 600
Tru9I	TTAA	5 cut(s)	17, 288, 312, 521, 600
TscAI	CASTG	2 cut(s)	391, 594
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	357, 394, 443, 472
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	272, 321, 421, 570, 624
TspRI	CASTG	2 cut(s)	391, 594
VspI	ATTAAT	2 cut(s)	17, 600
XapI	RAATTY	2 cut(s)	314, 627
XceI	RCATGY	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	338
XspI	CTAG	2 cut(s)	90, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.