RLG00000010046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002118
Physical Location & Seq
Forward (+)
62105254 .. 62108245
2992 bp
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UTR
Exon/CDS
Intron
RLM00000010046

Sequence Viewer

Length: 873 bp
ATGTTTAATTTTTCCATGGATTCATTCCTTCAAGCAATGGGAGGGAACAGAGGAAGTGCATATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAGCACCGGAACATCGTGACTCTTAATGGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTTGCTGAGGGGGAGATTCCACTCATGGTAGCTAAAGGAGAGGAGATAGCACGTTATAAAGGACTTGATCCGATAGAGCGTTTACTAATGTTAAAAGCACTCTGTGAACTCCGAGCAGATCAAAATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGTTTAGTAGCAATTTACCAGTGAACTTTATTAATAGTCTTATTCTTGCATACTTTGGTGTTCATATTAGCAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WHIM1

Protein Analysis

291

Amino Acids

32.16

Weight (kDa)

8.41

Isoelectric Point (pI)

27.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-SET PF05033 44 - 117 3.1e-12 Pre-SET motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
Acc16I TGCGCA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 341
AciI CCGC 1 cut(s) 550
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 2 cut(s) 537, 737
AdeI CACNNNGTG 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 341
AflIII ACRYGT 1 cut(s) 141
AgsI TTSAA 6 cut(s) 32, 92, 161, 305, 326, 685
AluBI AGCT 3 cut(s) 181, 398, 859
AluI AGCT 3 cut(s) 181, 398, 859
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 564
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 2 cut(s) 537, 737
AseI ATTAAT 3 cut(s) 299, 510, 783
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 332, 350
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 282
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 823
BccI CCATC 2 cut(s) 281, 593
BceAI ACGGC 2 cut(s) 274, 849
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 245
BisI GCNGC 1 cut(s) 837
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 1 cut(s) 838
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 2 cut(s) 332, 350
BmsI GCATC 4 cut(s) 181, 191, 484, 505
BpiI GAAGAC 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 372
Bpu1102I GCTNAGC 1 cut(s) 855
BsaAI YACGTR 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 15, 309
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse1I ACTGG 4 cut(s) 202, 706, 770, 840
Bse3DI GCAATG 2 cut(s) 42, 102
BseDI CCNNGG 2 cut(s) 15, 309
BseGI GGATG 2 cut(s) 206, 319
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 2 cut(s) 42, 102
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 4 cut(s) 202, 706, 770, 840
BseRI GAGGAG 2 cut(s) 422, 582
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 823
BshFI GGCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 564
BsmBI CGTCTC 1 cut(s) 564
BsnI GGCC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 67, 433, 484
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 550
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 364
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 42, 102
BsrI ACTGG 4 cut(s) 202, 706, 770, 840
BssECI CCNNGG 2 cut(s) 15, 309
BssMI GATC 3 cut(s) 67, 433, 484
BssT1I CCWWGG 2 cut(s) 15, 309
Bst4CI ACNGT 4 cut(s) 284, 367, 643, 870
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 372, 855
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 206, 319
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 70, 436, 487
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 3 cut(s) 67, 433, 484
BstSLI GKGCMC 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 662
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 206, 319
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 5 cut(s) 195, 504, 713, 777, 847
BveI ACCTGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 332, 350
CviAII CATG 2 cut(s) 16, 391
CviJI RGCY 8 cut(s) 181, 261, 308, 334, 398, 503, 836, 859
CviKI_1 RGCY 8 cut(s) 181, 261, 308, 334, 398, 503, 836, 859
DdeI CTNAG 2 cut(s) 372, 855
DpnI GATC 3 cut(s) 69, 435, 486
DpnII GATC 3 cut(s) 67, 433, 484
DraIII CACNNNGTG 1 cut(s) 470
Eco130I CCWWGG 2 cut(s) 15, 309
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 731
EcoT14I CCWWGG 2 cut(s) 15, 309
ErhI CCWWGG 2 cut(s) 15, 309
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 2 cut(s) 19, 394
FatI CATG 2 cut(s) 15, 390
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 837
FokI GGATG 2 cut(s) 213, 326
Fsp4HI GCNGC 1 cut(s) 837
FspBI CTAG 1 cut(s) 719
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 837
HaeIII GGCC 1 cut(s) 334
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 19, 394
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 6 cut(s) 20, 127, 227, 382, 650, 846
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 6 cut(s) 280, 350, 363, 449, 473, 775
Hpy188I TCNGA 5 cut(s) 265, 438, 479, 522, 744
Hpy188III TCNNGA 2 cut(s) 124, 731
Hpy8I GTNNAC 6 cut(s) 280, 350, 363, 449, 473, 775
HpyAV CCTTC 2 cut(s) 38, 363
HpyCH4III ACNGT 4 cut(s) 284, 367, 643, 870
HpyCH4IV ACGT 3 cut(s) 143, 174, 418
HpyCH4V TGCA 7 cut(s) 59, 150, 204, 210, 280, 497, 800
HpyF3I CTNAG 2 cut(s) 372, 855
HpySE526I ACGT 3 cut(s) 143, 174, 418
Hsp92II CATG 2 cut(s) 19, 394
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 67, 433, 484
LpnPI CCDG 7 cut(s) 128, 183, 199, 250, 719, 783, 853
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 4 cut(s) 181, 191, 484, 505
MaeI CTAG 1 cut(s) 719
MaeII ACGT 3 cut(s) 143, 174, 418
MaeIII GTNAC 4 cut(s) 124, 137, 637, 824
MalI GATC 3 cut(s) 69, 435, 486
MboI GATC 3 cut(s) 67, 433, 484
MboII GAAGA 2 cut(s) 534, 667
MfeI CAATTG 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 6 cut(s) 7, 205, 300, 537, 737, 763
MlyI GAGTC 2 cut(s) 121, 659
MnlI CCTC 9 cut(s) 35, 44, 65, 75, 367, 400, 560, 573, 727
MseI TTAA 7 cut(s) 6, 132, 255, 299, 458, 510, 783
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 205
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 274
NdeII GATC 3 cut(s) 67, 433, 484
NlaIII CATG 2 cut(s) 19, 394
NmuCI GTSAC 1 cut(s) 124
NsbI TGCGCA 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 731
PfeI GAWTC 4 cut(s) 20, 227, 382, 846
PflMI CCANNNNNTGG 1 cut(s) 341
PkrI GCNGC 1 cut(s) 838
PleI GAGTC 2 cut(s) 121, 658
PpsI GAGTC 2 cut(s) 121, 658
Ppu21I YACGTR 1 cut(s) 144
PshBI ATTAAT 3 cut(s) 299, 510, 783
PsiI TTATAA 1 cut(s) 423
PspPI GGNCC 2 cut(s) 332, 350
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 7 cut(s) 6, 132, 255, 299, 458, 510, 783
SatI GCNGC 1 cut(s) 837
Sau3AI GATC 3 cut(s) 67, 433, 484
Sau96I GGNCC 2 cut(s) 332, 350
SchI GAGTC 2 cut(s) 121, 659
SduI GDGCHC 1 cut(s) 282
SfaNI GCATC 4 cut(s) 181, 191, 484, 505
Sfr274I CTCGAG 1 cut(s) 731
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 731
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 6 cut(s) 7, 205, 300, 537, 737, 763
SsiI CCGC 1 cut(s) 550
SspMI CTAG 1 cut(s) 719
StyI CCWWGG 2 cut(s) 15, 309
TaaI ACNGT 4 cut(s) 284, 367, 643, 870
TaiI ACGT 3 cut(s) 146, 177, 421
TaqI TCGA 3 cut(s) 70, 653, 732
TasI AATT 6 cut(s) 7, 205, 300, 537, 737, 763
TfiI GAWTC 4 cut(s) 20, 227, 382, 846
Tru1I TTAA 7 cut(s) 6, 132, 255, 299, 458, 510, 783
Tru9I TTAA 7 cut(s) 6, 132, 255, 299, 458, 510, 783
TscAI CASTG 5 cut(s) 202, 504, 713, 777, 847
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 12, 534, 803
TspRI CASTG 5 cut(s) 202, 504, 713, 777, 847
Van91I CCANNNNNTGG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 3 cut(s) 299, 510, 783
XapI RAATTY 2 cut(s) 537, 737
XhoI CTCGAG 1 cut(s) 731
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.