Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002118

Physical Location & Seq

Genomic Coordinates Forward (+)

40439005 .. 40446938

Gene Structure 7934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATAATCTCAATCCGATTCCAAATCTCACTAAATTTACTGAGATTTTTCTATTCTTGGGAATGGGTTCAAATGTTGGAGAGTCCTCCAACATTGTCTCTTCTAGGACAGACCCATAATCCGGATTTATCTCATGAGATGGATCGGTTTGAGATTGCGATGTTAAGAGGATTCAATCCTTCGAACCTGATGGTCTACCTCGCTTCTGGGCAGGGACATATGACTCATATCTCAATCACTAAACAAGCACTACTGTACAAGGCAAATTTTCCTCACTGCAAATTTTCCTCACGTTATAAAGGACTTGATCCGACGGAGCGTTTACTAATGTTAAAAGCACTCTGTGAACTCCGAGCCGATCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCACTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGATGAACTCTCATCAAGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGTTATTCCTGCTCTTGAGAAACTTCAGAAGACAACAGACAGCATACTAGTCGCTGTTGTAGTAAACTTTATCAGACGACAGTTTTTTGAATTTAACAAAATGCAGGGTATTGTTGTAAATATTTCAGACCCACTCTCCCTCCGTGGGACCAAGCAGCCCAGCATGCCTCACACACCATTTGACTTACGCATGAAAGCCCGGGTCACAAGCCTGCAGACTAAGCCCAATAGGCTTCACTATCAAGCCCACTCCTTCTTTGGTCCAGCAGAATCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WHIM1

Protein Analysis

322

Amino Acids

36.82

Weight (kDa)

9.07

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25580
fragaria_vesca	FvH4_2g30480 FvH4_2g30480 FvH4_2g30480
malus_domestica	MD08G1131900.v1.1
prunus_persica	Prupe.1G464000_v2.0.a1
pyrus_communis	pycom08g11050 pycom10g20470
rosa_chinensis	RchiOBHm_Chr2g0098451 RchiOBHm_Chr3g0485791 RchiOBHm_Chr6g0279171 RchiOBHm_Chr6g0312561
rosa_laevigata	RLG00000010046 RLG00000010316 RLG00000022980 RLG00000034454
rosa_multiflora	Rmu_sc0003094.1_g000011 Rmu_sc0008363.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034380 Rroxscaffold_2G00107370 Rroxscaffold_3G00241050 Rroxscaffold_3G00241960 Rroxscaffold_6G00414860 Rroxscaffold_7G00156690 Rroxscaffold_7G00189060
rosa_rugosa	Rorug01G0191100 Rorug04G0105900 Rorug06G0123300 Rorug06G0197300 Rorug06G0215800 Rorug06G0396500
rosa_samantha	Rh1BG106100 Rh1DG070000 Rh2CG403200 Rh3CG093200 Rh4BG061300 Rh5CG484500 Rh6AG514100 Rh6CG530800 Rh6DG516400 Rh7DG190800
rosa_wichuraiana	Rw1G001170 Rw2G026220 Rw6G044670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	195
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	150, 302
AcsI	RAATTY	6 cut(s)	34, 265, 281, 411, 611, 779
AcuI	CTGAAG	1 cut(s)	698
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	121, 834
AgsI	TTSAA	5 cut(s)	71, 175, 559, 683, 779
AhlI	ACTAGT	1 cut(s)	736
Alw26I	GTCTC	2 cut(s)	102, 438
AlwI	GGATC	2 cut(s)	150, 302
Ama87I	CYCGRG	2 cut(s)	605, 888
Aor13HI	TCCGGA	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	668, 844
ApoI	RAATTY	6 cut(s)	34, 265, 281, 411, 611, 779
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	837, 950
AsuC2I	CCSGG	2 cut(s)	889, 890
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	605, 888
AvaII	GGWCC	2 cut(s)	837, 950
BbsI	GAAGAC	2 cut(s)	536, 725
BbvI	GCAGC	2 cut(s)	655, 856
BccI	CCATC	3 cut(s)	133, 184, 467
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BcnI	CCSGG	2 cut(s)	889, 890
BcoDI	GTCTC	2 cut(s)	102, 438
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	3 cut(s)	104, 593, 737
BfmI	CTRYAG	1 cut(s)	902
BglI	GCCNNNNNGGC	1 cut(s)	919
BisI	GCNGC	2 cut(s)	669, 845
BlsI	GCNGC	2 cut(s)	670, 846
Bme1390I	CCNGG	2 cut(s)	889, 890
Bme18I	GGWCC	2 cut(s)	837, 950
BmeT110I	CYCGRG	2 cut(s)	605, 888
BmgT120I	GGNCC	2 cut(s)	837, 950
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	2 cut(s)	889, 890
BmsI	GCATC	3 cut(s)	358, 379, 655
BpiI	GAAGAC	2 cut(s)	536, 725
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	2 cut(s)	889, 890
BsaJI	CCNNGG	2 cut(s)	832, 888
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	4 cut(s)	809, 813, 839, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 834
Bse1I	ACTGG	1 cut(s)	580
BseAI	TCCGGA	1 cut(s)	121
BseDI	CCNNGG	2 cut(s)	832, 888
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	121, 834
BseMII	CTCAG	2 cut(s)	32, 513
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	655, 856
BseYI	CCCAGC	1 cut(s)	848
BsiHKCI	CYCGRG	2 cut(s)	605, 888
BsiSI	CCGG	2 cut(s)	122, 889
BslFI	GGGAC	2 cut(s)	228, 850
BslI	CCNNNNNNNGG	2 cut(s)	121, 834
BsmAI	GTCTC	2 cut(s)	102, 438
BsmBI	CGTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	228, 850
BsoBI	CYCGRG	2 cut(s)	605, 888
Bsp119I	TTCGAA	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	142, 307, 358
BspACI	CCGC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	33, 514
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	838
BspMAI	CTGCAG	1 cut(s)	906
BspPI	GGATC	2 cut(s)	150, 302
BspT104I	TTCGAA	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	832, 888
BssMI	GATC	3 cut(s)	142, 307, 358
Bst4CI	ACNGT	3 cut(s)	255, 517, 771
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	854, 902
BstDEI	CTNAG	4 cut(s)	41, 522, 672, 909
BstDSI	CCRYGG	1 cut(s)	832
BstF5I	GGATG	1 cut(s)	634
BstKTI	GATC	3 cut(s)	145, 310, 361
BstMAI	GTCTC	2 cut(s)	102, 438
BstMBI	GATC	3 cut(s)	142, 307, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	853, 910, 919
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	2 cut(s)	887, 888
BstSFI	CTRYAG	1 cut(s)	902
BstV1I	GCAGC	2 cut(s)	655, 856
BstV2I	GAAGAC	2 cut(s)	536, 725
BtgI	CCRYGG	1 cut(s)	832
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	2 cut(s)	274, 378
BtsIMutI	CAGTG	4 cut(s)	274, 378, 519, 587
Cac8I	GCNNGC	2 cut(s)	854, 902
CciI	TCATGA	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	837, 950
Cfr9I	CCCGGG	1 cut(s)	888
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	3 cut(s)	134, 853, 880
CviJI	RGCY	8 cut(s)	356, 377, 847, 887, 900, 913, 922, 935
CviKI_1	RGCY	8 cut(s)	356, 377, 847, 887, 900, 913, 922, 935
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	4 cut(s)	41, 522, 672, 909
DpnI	GATC	3 cut(s)	144, 309, 360
DpnII	GATC	3 cut(s)	142, 307, 358
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco47I	GGWCC	2 cut(s)	837, 950
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	605, 888
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	3 cut(s)	137, 856, 883
FaqI	GGGAC	2 cut(s)	228, 850
FatI	CATG	3 cut(s)	133, 852, 879
FauNDI	CATATG	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	669, 845
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	669, 845
FspBI	CTAG	3 cut(s)	104, 593, 737
GluI	GCNGC	2 cut(s)	669, 845
GsaI	CCCAGC	1 cut(s)	852
HapII	CCGG	2 cut(s)	122, 889
Hin1II	CATG	3 cut(s)	137, 856, 883
HinfI	GANTC	6 cut(s)	18, 82, 171, 223, 524, 959
HpaII	CCGG	2 cut(s)	122, 889
Hpy166II	GTNNAC	4 cut(s)	196, 323, 347, 754
Hpy188I	TCNGA	8 cut(s)	17, 312, 353, 396, 618, 717, 764, 817
Hpy188III	TCNNGA	5 cut(s)	122, 134, 362, 605, 704
Hpy8I	GTNNAC	4 cut(s)	196, 323, 347, 754
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	189, 952
HpyCH4III	ACNGT	3 cut(s)	255, 517, 771
HpyCH4IV	ACGT	2 cut(s)	292, 661
HpyCH4V	TGCA	5 cut(s)	279, 371, 653, 793, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	853, 910, 919
HpyF3I	CTNAG	4 cut(s)	41, 522, 672, 909
HpySE526I	ACGT	2 cut(s)	292, 661
Hsp92II	CATG	3 cut(s)	137, 856, 883
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	142, 307, 358
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	655, 856
LweI	GCATC	3 cut(s)	358, 379, 655
MaeI	CTAG	3 cut(s)	104, 593, 737
MaeII	ACGT	2 cut(s)	292, 661
MaeIII	GTNAC	3 cut(s)	511, 517, 892
MalI	GATC	3 cut(s)	144, 309, 360
MboI	GATC	3 cut(s)	142, 307, 358
MboII	GAAGA	4 cut(s)	92, 408, 541, 730
MluCI	AATT	6 cut(s)	34, 265, 281, 411, 611, 779
MlyI	GAGTC	3 cut(s)	91, 217, 533
MmeI	TCCRAC	3 cut(s)	57, 113, 335
MroI	TCCGGA	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	4 cut(s)	164, 332, 384, 783
MspI	CCGG	2 cut(s)	122, 889
MspR9I	CCNGG	2 cut(s)	889, 890
MwoI	GCNNNNNNNGC	3 cut(s)	853, 910, 919
NciI	CCSGG	2 cut(s)	889, 890
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	3 cut(s)	142, 307, 358
NlaIII	CATG	3 cut(s)	137, 856, 883
NlaIV	GGNNCC	1 cut(s)	838
NmuCI	GTSAC	2 cut(s)	517, 892
NspI	RCATGY	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	856
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	18, 171, 959
PkrI	GCNGC	2 cut(s)	670, 846
PleI	GAGTC	3 cut(s)	90, 217, 532
PpsI	GAGTC	3 cut(s)	90, 217, 532
PshBI	ATTAAT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	2 cut(s)	837, 950
PstI	CTGCAG	1 cut(s)	906
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	4 cut(s)	164, 332, 384, 783
SatI	GCNGC	2 cut(s)	669, 845
Sau3AI	GATC	3 cut(s)	142, 307, 358
Sau96I	GGNCC	2 cut(s)	837, 950
SchI	GAGTC	3 cut(s)	91, 217, 533
ScrFI	CCNGG	2 cut(s)	889, 890
SetI	ASST	6 cut(s)	189, 201, 295, 493, 564, 664
SfaNI	GCATC	3 cut(s)	358, 379, 655
SfcI	CTRYAG	1 cut(s)	902
Sfr274I	CTCGAG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	2 cut(s)	837, 950
SlaI	CTCGAG	1 cut(s)	605
SmaI	CCCGGG	1 cut(s)	890
SmlI	CTYRAG	2 cut(s)	605, 704
SmoI	CTYRAG	2 cut(s)	605, 704
SpeI	ACTAGT	1 cut(s)	736
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	6 cut(s)	34, 265, 281, 411, 611, 779
SsiI	CCGC	1 cut(s)	424
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	3 cut(s)	104, 593, 737
StyD4I	CCNGG	2 cut(s)	887, 888
TaaI	ACNGT	3 cut(s)	255, 517, 771
TaiI	ACGT	2 cut(s)	295, 664
TaqI	TCGA	3 cut(s)	182, 527, 606
TasI	AATT	6 cut(s)	34, 265, 281, 411, 611, 779
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	18, 171, 959
Tru1I	TTAA	4 cut(s)	164, 332, 384, 783
Tru9I	TTAA	4 cut(s)	164, 332, 384, 783
TscAI	CASTG	4 cut(s)	281, 378, 526, 587
TseFI	GTSAC	2 cut(s)	517, 892
TseI	GCWGC	2 cut(s)	668, 844
Tsp45I	GTSAC	2 cut(s)	517, 892
TspDTI	ATGAA	3 cut(s)	408, 645, 896
TspGWI	ACGGA	2 cut(s)	329, 821
TspMI	CCCGGG	1 cut(s)	888
TspRI	CASTG	4 cut(s)	281, 378, 526, 587
VpaK11BI	GGWCC	2 cut(s)	837, 950
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	6 cut(s)	34, 265, 281, 411, 611, 779
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944
XhoI	CTCGAG	1 cut(s)	605
XmaI	CCCGGG	1 cut(s)	888
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	3 cut(s)	104, 593, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.