AT5G40850

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002225
Physical Location & Seq
Forward (+)
16365900 .. 16369316
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40850.2

Sequence Viewer

Length: 1110 bp
ATGGCTCTTGTTCAGCGGATTCCAATTTCCTCCTCCAGTATTCGGAATTGGCAACAAGCGAGGACCAATTTGACTCCTATTTGTTGTTTACATTACAATACTGCATCTTCTTCTTCTTCACCCTTTACAGAGAAGCACTCTGTGGAGAGATACCAAAGGGATCAATGGCTGTACAAAGCGGTTGAACCAACGCCACCATCGACTCCATCTCCATCGCCATTTGAAGATGAAGTCTTTGTTAGGGAAAACGACATTGCATCGCAGCTGCCTGAGCTGAAGAAGCTTTTGGCAGTGCTGAAAGAGAAGAGAGTTAAAGGATGCAAAGGTGGTGATTGTGGACCAGGAGATGTGTATCTTGTTGGGACAGGGCCAGGAGATCCTGAGCTTTTGACTCTTAAAGCTGTCAGAGTTATTCAAAGTGCCGATCTTTTGCTTTACGACAGGCTTGTCTCCAATGATGTCTTGGAGTTGGTTGCTCCTGATGCTAGACTTCTTTATGTCGGCAAAACTGCTGGTTATCATAGCAGAACTCAGGAAGAGATTCATGAACTACTCCTAAATTTTGCTGAAGCTGGTGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGGTCTTTGGACGGGGCGGCGAAGAAATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGGGATAACTGCGGCGTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGTAAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACAGACCCTCTGTTTGTTGCAGAGAATGCAGCTGACCCGGATACAACACTTGTCGTTTATATGGGTTTGGGAACTTTACCTTCTCTTGCACAAAAACTAATGGACCATGGTCTCCCTTCTGATACACCAGCTGTTGCGGTTGAACGTGGAACCACTCCTCTACAGCGTACAGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGATTCAGTCAGCTGGATTGGTGTCACCAACACTCATCATCATAGGGAAAGTCGTTGAGCTCTCACCTTTATGGCCACATTGCACGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

369

Amino Acids

39.93

Weight (kDa)

5.81

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 117 - 321 3e-51 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 575
AciI CCGC 5 cut(s) 16, 179, 627, 692, 926
AclWI GGATC 3 cut(s) 168, 371, 599
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 2 cut(s) 296, 588
AcyI GRCGYC 1 cut(s) 695
AdeI CACNNNGTG 1 cut(s) 142
AfaI GTAC 2 cut(s) 173, 958
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 6 cut(s) 185, 224, 416, 671, 777, 932
AhlI ACTAGT 1 cut(s) 749
AjnI CCWGG 3 cut(s) 340, 370, 679
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 3 cut(s) 454, 905, 1094
AlwI GGATC 3 cut(s) 168, 371, 599
AoxI GGCC 2 cut(s) 368, 1064
ApeKI GCWGC 4 cut(s) 262, 265, 707, 818
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 4 cut(s) 63, 338, 368, 892
AsuC2I CCSGG 2 cut(s) 827, 1105
AsuHPI GGTGA 4 cut(s) 111, 341, 1008, 1047
AvaII GGWCC 3 cut(s) 63, 338, 892
BalI TGGCCA 1 cut(s) 1066
BanI GGYRCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 1053
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 4 cut(s) 252, 274, 719, 830
BccI CCATC 3 cut(s) 205, 214, 220
BcgI CGANNNNNNTGC 2 cut(s) 644, 678
BciT130I CCWGG 3 cut(s) 342, 372, 681
BciVI GTATCC 1 cut(s) 823
BcnI CCSGG 2 cut(s) 827, 1105
BcoDI GTCTC 3 cut(s) 454, 905, 1094
BcuI ACTAGT 1 cut(s) 749
BfaI CTAG 2 cut(s) 486, 750
BfmI CTRYAG 1 cut(s) 950
BfuI GTATCC 1 cut(s) 823
BisI GCNGC 6 cut(s) 263, 266, 628, 693, 708, 819
BlpI GCTNAGC 1 cut(s) 969
BlsI GCNGC 6 cut(s) 264, 267, 629, 694, 709, 820
Bme1390I CCNGG 5 cut(s) 342, 372, 681, 827, 1105
Bme18I GGWCC 3 cut(s) 63, 338, 892
BmgT120I GGNCC 4 cut(s) 63, 338, 368, 892
BmiI GGNNCC 2 cut(s) 577, 940
BmrFI CCNGG 5 cut(s) 342, 372, 681, 827, 1105
BmsI GCATC 4 cut(s) 113, 266, 308, 472
BoxI GACNNNNGTC 1 cut(s) 897
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 19
Bpu10I CCTNAGC 2 cut(s) 270, 381
Bpu1102I GCTNAGC 1 cut(s) 969
BpuMI CCSGG 2 cut(s) 827, 1105
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 695
BsaI GGTCTC 2 cut(s) 905, 1094
BsaJI CCNNGG 2 cut(s) 680, 895
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 36, 772
Bse3DI GCAATG 2 cut(s) 252, 1069
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 3 cut(s) 342, 372, 681
BseDI CCNNGG 2 cut(s) 680, 895
BseGI GGATG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 2 cut(s) 252, 1069
BseMII CTCAG 5 cut(s) 261, 372, 545, 960, 981
BseNI ACTGG 2 cut(s) 36, 772
BseRI GAGGAG 2 cut(s) 22, 936
BseXI GCAGC 4 cut(s) 252, 274, 719, 830
BshFI GGCC 2 cut(s) 370, 1066
BshNI GGYRCC 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 1053
BsiSI CCGG 2 cut(s) 827, 1105
BslFI GGGAC 2 cut(s) 376, 802
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 454, 905, 1094
BsmFI GGGAC 2 cut(s) 376, 802
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 2 cut(s) 370, 1066
Bso31I GGTCTC 2 cut(s) 905, 1094
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 4 cut(s) 160, 376, 424, 604
Bsp1720I GCTNAGC 1 cut(s) 969
Bsp19I CCATGG 1 cut(s) 895
BspACI CCGC 5 cut(s) 16, 179, 627, 692, 926
BspANI GGCC 2 cut(s) 370, 1066
BspCNI CTCAG 5 cut(s) 262, 373, 544, 961, 982
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 577, 940
BspPI GGATC 3 cut(s) 168, 371, 599
BspT107I GGYRCC 1 cut(s) 575
BspTNI GGTCTC 2 cut(s) 905, 1094
BsrDI GCAATG 2 cut(s) 252, 1069
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 2 cut(s) 36, 772
BssECI CCNNGG 2 cut(s) 680, 895
BssMI GATC 4 cut(s) 160, 376, 424, 604
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 3 cut(s) 342, 372, 681
Bst4CI ACNGT 2 cut(s) 583, 961
Bst6I CTCTTC 2 cut(s) 299, 531
BstACI GRCGYC 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 815
BstAUI TGTACA 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 270, 381, 531, 969, 990
BstDSI CCRYGG 1 cut(s) 895
BstF5I GGATG 1 cut(s) 323
BstKTI GATC 4 cut(s) 163, 379, 427, 607
BstMAI GTCTC 3 cut(s) 454, 905, 1094
BstMBI GATC 4 cut(s) 160, 376, 424, 604
BstMWI GCNNNNNNNGC 4 cut(s) 271, 280, 482, 815
BstNI CCWGG 3 cut(s) 342, 372, 681
BstPAI GACNNNNGTC 1 cut(s) 897
BstSCI CCNGG 5 cut(s) 340, 370, 679, 825, 1103
BstSFI CTRYAG 1 cut(s) 950
BstV1I GCAGC 4 cut(s) 252, 274, 719, 830
BstX2I RGATCY 2 cut(s) 376, 604
BstYI RGATCY 2 cut(s) 376, 604
BsuI GTATCC 1 cut(s) 823
BsuRI GGCC 2 cut(s) 370, 1066
BtgI CCRYGG 1 cut(s) 895
BtgZI GCGATG 2 cut(s) 198, 243
BtsCI GGATG 1 cut(s) 323
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 297, 579, 765
CciI TCATGA 1 cut(s) 544
Cfr13I GGNCC 4 cut(s) 63, 338, 368, 892
CseI GACGC 1 cut(s) 684
Csp6I GTAC 2 cut(s) 172, 957
CviAII CATG 2 cut(s) 545, 896
CviQI GTAC 2 cut(s) 172, 957
DdeI CTNAG 5 cut(s) 270, 381, 531, 969, 990
DpnI GATC 4 cut(s) 162, 378, 426, 606
DpnII GATC 4 cut(s) 160, 376, 424, 604
DraIII CACNNNGTG 1 cut(s) 142
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 1064
Eam1104I CTCTTC 2 cut(s) 299, 531
EarI CTCTTC 2 cut(s) 299, 531
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 1053
Eco31I GGTCTC 2 cut(s) 905, 1094
Eco47I GGWCC 3 cut(s) 63, 338, 892
Eco53kI GAGCTC 1 cut(s) 1051
Eco57I CTGAAG 2 cut(s) 296, 588
EcoICRI GAGCTC 1 cut(s) 1051
EcoRII CCWGG 3 cut(s) 340, 370, 679
EcoT14I CCWWGG 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 2 cut(s) 548, 899
FaiI YATR 9 cut(s) 498, 522, 546, 677, 849, 851, 897, 1034, 1063
FaqI GGGAC 2 cut(s) 376, 802
FatI CATG 2 cut(s) 544, 895
Fnu4HI GCNGC 6 cut(s) 263, 266, 628, 693, 708, 819
FokI GGATG 1 cut(s) 330
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 6 cut(s) 263, 266, 628, 693, 708, 819
FspBI CTAG 2 cut(s) 486, 750
GluI GCNGC 6 cut(s) 263, 266, 628, 693, 708, 819
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 2 cut(s) 370, 1066
HapII CCGG 2 cut(s) 827, 1105
HgaI GACGC 1 cut(s) 684
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 2 cut(s) 548, 899
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 9 cut(s) 19, 73, 202, 391, 541, 661, 721, 994, 1082
HpaII CCGG 2 cut(s) 827, 1105
HphI GGTGA 4 cut(s) 111, 341, 1008, 1047
Hpy166II GTNNAC 2 cut(s) 89, 338
Hpy188I TCNGA 3 cut(s) 45, 407, 910
Hpy188III TCNNGA 4 cut(s) 380, 479, 533, 545
Hpy8I GTNNAC 2 cut(s) 89, 338
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 2 cut(s) 879, 915
HpyCH4III ACNGT 2 cut(s) 583, 961
HpyCH4IV ACGT 1 cut(s) 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 271, 280, 482, 815
HpyF3I CTNAG 5 cut(s) 270, 381, 531, 969, 990
HpySE526I ACGT 1 cut(s) 934
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 2 cut(s) 548, 899
Kzo9I GATC 4 cut(s) 160, 376, 424, 604
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 4 cut(s) 252, 274, 719, 830
LweI GCATC 4 cut(s) 113, 266, 308, 472
MaeI CTAG 2 cut(s) 486, 750
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 1 cut(s) 1014
MalI GATC 4 cut(s) 162, 378, 426, 606
MboI GATC 4 cut(s) 160, 376, 424, 604
MboII GAAGA 9 cut(s) 99, 102, 105, 108, 236, 289, 316, 548, 644
MflI RGATCY 2 cut(s) 376, 604
MhlI GDGCHC 1 cut(s) 1053
MlsI TGGCCA 1 cut(s) 1066
MluCI AATT 4 cut(s) 24, 46, 67, 559
MluNI TGGCCA 1 cut(s) 1066
MlyI GAGTC 3 cut(s) 67, 196, 385
MnlI CCTC 9 cut(s) 40, 43, 54, 618, 731, 779, 807, 957, 1096
Mox20I TGGCCA 1 cut(s) 1066
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 1066
MseI TTAA 4 cut(s) 312, 396, 594, 975
MslI CAYNNNNRTG 2 cut(s) 738, 1060
Msp20I TGGCCA 1 cut(s) 1066
MspA1I CMGCKG 5 cut(s) 16, 265, 821, 920, 1004
MspI CCGG 2 cut(s) 827, 1105
MspR9I CCNGG 5 cut(s) 342, 372, 681, 827, 1105
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 3 cut(s) 342, 372, 681
MwoI GCNNNNNNNGC 4 cut(s) 271, 280, 482, 815
NciI CCSGG 2 cut(s) 827, 1105
NcoI CCATGG 1 cut(s) 895
NdeII GATC 4 cut(s) 160, 376, 424, 604
NlaIII CATG 2 cut(s) 548, 899
NlaIV GGNNCC 2 cut(s) 577, 940
NmuCI GTSAC 1 cut(s) 1014
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 6 cut(s) 19, 541, 661, 721, 994, 1082
PkrI GCNGC 6 cut(s) 264, 267, 629, 694, 709, 820
PleI GAGTC 3 cut(s) 67, 196, 385
PpsI GAGTC 3 cut(s) 67, 196, 385
PshAI GACNNNNGTC 1 cut(s) 897
Psp124BI GAGCTC 1 cut(s) 1053
Psp6I CCWGG 3 cut(s) 340, 370, 679
PspGI CCWGG 3 cut(s) 340, 370, 679
PspN4I GGNNCC 2 cut(s) 577, 940
PspPI GGNCC 4 cut(s) 63, 338, 368, 892
PsuI RGATCY 2 cut(s) 376, 604
PvuII CAGCTG 4 cut(s) 265, 821, 920, 1004
RsaI GTAC 2 cut(s) 173, 958
RsaNI GTAC 2 cut(s) 172, 957
RseI CAYNNNNRTG 2 cut(s) 738, 1060
SacI GAGCTC 1 cut(s) 1053
SaqAI TTAA 4 cut(s) 312, 396, 594, 975
SatI GCNGC 6 cut(s) 263, 266, 628, 693, 708, 819
Sau3AI GATC 4 cut(s) 160, 376, 424, 604
Sau96I GGNCC 4 cut(s) 63, 338, 368, 892
SchI GAGTC 3 cut(s) 67, 196, 385
ScrFI CCNGG 5 cut(s) 342, 372, 681, 827, 1105
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 4 cut(s) 113, 266, 308, 472
SfcI CTRYAG 1 cut(s) 950
SinI GGWCC 3 cut(s) 63, 338, 892
SmiMI CAYNNNNRTG 2 cut(s) 738, 1060
SpeI ACTAGT 1 cut(s) 749
Sse9I AATT 4 cut(s) 24, 46, 67, 559
SsiI CCGC 5 cut(s) 16, 179, 627, 692, 926
SspMI CTAG 2 cut(s) 486, 750
SstI GAGCTC 1 cut(s) 1053
StyD4I CCNGG 5 cut(s) 340, 370, 679, 825, 1103
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 2 cut(s) 583, 961
TaiI ACGT 1 cut(s) 937
TaqI TCGA 3 cut(s) 200, 664, 736
TasI AATT 4 cut(s) 24, 46, 67, 559
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 630, 695
TfiI GAWTC 6 cut(s) 19, 541, 661, 721, 994, 1082
Tru1I TTAA 4 cut(s) 312, 396, 594, 975
Tru9I TTAA 4 cut(s) 312, 396, 594, 975
TscAI CASTG 3 cut(s) 297, 586, 772
TseFI GTSAC 1 cut(s) 1014
TseI GCWGC 4 cut(s) 262, 265, 707, 818
Tsp45I GTSAC 1 cut(s) 1014
TspDTI ATGAA 3 cut(s) 243, 533, 561
TspRI CASTG 3 cut(s) 297, 586, 772
VpaK11BI GGWCC 3 cut(s) 63, 338, 892
XapI RAATTY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 2 cut(s) 486, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.