Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Forward (+)

1508020 .. 1513360

Gene Structure 5341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG009600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGTGGAAGAGCCGGTGGGTGTTGTCGGACTGGAAAAGGGCCGAAGGAAAAGCAGGAACGTTTAAGTACATTGCAGGGAAATGGTCTGGAGATCCTGATGATAAAGGTCTTTGCAGAACTGAAGGATCTTGCCAATGAAATTACATTAGCAGAGTTAGTATCACCAACGCTCATCGTCATTGGGAAAGTAGTTGCACTTTCCACCATTGTGGCCACATACTTTGAACGAAGTGGCTGCTCTTGTCGGAGCCATATAGACAAAATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

90

Amino Acids

9.67

Weight (kDa)

8.42

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	61
AclWI	GGATC	2 cut(s)	88, 135
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	227
AleI	CACNNNNGTG	1 cut(s)	209
AlwI	GGATC	2 cut(s)	88, 135
AoxI	GGCC	2 cut(s)	41, 213
ApeKI	GCWGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	43, 215
BsiSI	CCGG	1 cut(s)	15
BsnI	GGCC	2 cut(s)	43, 215
Bsp143I	GATC	2 cut(s)	93, 127
BspANI	GGCC	2 cut(s)	43, 215
BspLI	GGNNCC	1 cut(s)	251
BspPI	GGATC	2 cut(s)	88, 135
BspQI	GCTCTTC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	14
BssMI	GATC	2 cut(s)	93, 127
Bst6I	CTCTTC	1 cut(s)	4
BstKTI	GATC	2 cut(s)	96, 130
BstMBI	GATC	2 cut(s)	93, 127
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	93, 127
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	2 cut(s)	93, 127
BsuRI	GGCC	2 cut(s)	43, 215
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviJI	RGCY	5 cut(s)	14, 43, 215, 237, 252
CviKI_1	RGCY	5 cut(s)	14, 43, 215, 237, 252
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	2 cut(s)	95, 129
DpnII	GATC	2 cut(s)	93, 127
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	143
FaiI	YATR	3 cut(s)	220, 255, 257
Fnu4HI	GCNGC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	43, 215
HapII	CCGG	1 cut(s)	15
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	30, 249
Hpy188III	TCNNGA	2 cut(s)	89, 97
HpyAV	CCTTC	2 cut(s)	40, 118
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	76, 116, 197
HpySE526I	ACGT	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	93, 127
LguI	GCTCTTC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	6 cut(s)	18, 28, 41, 62, 74, 110
Lsp1109I	GCAGC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	61
MalI	GATC	2 cut(s)	95, 129
MboI	GATC	2 cut(s)	93, 127
MboII	GAAGA	1 cut(s)	21
MflI	RGATCY	2 cut(s)	93, 127
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	141, 264
MluNI	TGGCCA	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	8, 227
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	93, 127
NlaIV	GGNNCC	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	2 cut(s)	93, 127
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	2 cut(s)	93, 127
Sau96I	GGNCC	1 cut(s)	41
SetI	ASST	2 cut(s)	64, 111
SgeI	CNNG	8 cut(s)	27, 45, 68, 89, 101, 109, 143, 255
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	141, 264
TaiI	ACGT	1 cut(s)	64
TasI	AATT	2 cut(s)	141, 264
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.