Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Reverse (-)

592603 .. 596105

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G005900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTCTTGTCTATAAGCTTCAATCTCTGTCTTCCTCTTTATCTTCGACCCATTTCAGAAAACCCAACTCCTTAAACCCACAACCCATTTGTTCTTTACACTTCAACTCCTCTTCTAATTCTTCACCTTTTACAGAGAAGACTTCTATTGAGAGGTACCAGAGAGACCAATGGCTGTACAAGAACCAATTGGATCAAGCCACTCTATGCTCTGTCCCGCCAGATTTTGATTCTATAAGGCAAAATGACATTGCTTTGCAGCTACCGGAGCTGAGAAAGCTGCTTCAGGTTCTGAGAGGGAAGAGAGAGAGCGAAGGAGGGTGTGGCAGCGGCAAATGTGGGCCTGGAAATGTGTTCTTGGTCGGGACAGGGCCTGGGGACCCTGAGCTCCTGACATTGAAGGCGTATAGAGTTATTCAGAATGCTGATCTATTGTTGTATGATAGGTTGGTGTCCAATGATGTGTTGGAATTGGTTGGCTCTGGTGCTAGACTTCTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATACATGAATTGCTACTGAGTTTTGCTGAAGCTGGAGCTAATGTTGTGAGACTGAAAGGAGGGGATCCACTGGTGTTTGGTAGGGGTGGGGAGGAGATGGATTTTCTGCGACAGCAAGGAATTGAAGTGAATGTTATTCCAGGTATTACTGCTGCTTCAGGGATAGCAGCAGTGTTAGGGATTCCATTAACTCATCGTGGTGTCGCAAATAGTGTCAGATTTCTTACCGGGCACTCCAGGAAGGGAGGAACAGACCCTCTGTTTGTTGCAGAGAATGCAGCTGACCCTGATTCAACCTTGGTGGTTTATATGGGTTTGTCGACCCTCCCCTCTCTTGCTCAAAAGTTGGTGCATCATGGTTTGCCACCAAATACACCAGCTGTTGCAGTTGAGCGAGGGACCACACCTCAACAGCGCATGGTTTTTGCAGAACTGAAGGATCTTGCTGATGAAATTATATCAGCAGAATTAGTATCACCAACGTTGATCATCATTGGAAAAGTAGTTGCACTTTCACCATCGTGGCCATATTCTTCAAAGGAAGTGTCATGTTTTGTAGAAGCGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

371

Amino Acids

39.96

Weight (kDa)

6.26

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	156, 519
AccB1I	GGYRCC	2 cut(s)	156, 519
AccI	GTMKAC	1 cut(s)	863
AciI	CCGC	2 cut(s)	218, 330
AclI	AACGTT	1 cut(s)	1025
AclWI	GGATC	4 cut(s)	201, 602, 615, 990
AcoI	YGGCCR	1 cut(s)	1067
AcuI	CTGAAG	4 cut(s)	269, 591, 684, 998
AfaI	GTAC	3 cut(s)	158, 179, 521
AgsI	TTSAA	6 cut(s)	23, 106, 400, 668, 837, 1080
AjnI	CCWGG	5 cut(s)	343, 373, 534, 682, 779
AleI	CACNNNNGTG	1 cut(s)	1063
AluBI	AGCT	9 cut(s)	19, 262, 271, 280, 388, 575, 581, 824, 923
AluI	AGCT	9 cut(s)	19, 262, 271, 280, 388, 575, 581, 824, 923
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	2 cut(s)	159, 586
AlwI	GGATC	4 cut(s)	201, 602, 615, 990
AlwNI	CAGNNNCTG	2 cut(s)	292, 374
AoxI	GGCC	3 cut(s)	341, 371, 1067
ApeKI	GCWGC	6 cut(s)	259, 280, 327, 695, 710, 821
ArsI	GACNNNNNNTTYG	4 cut(s)	788, 820, 1073, 1105
Asp718I	GGTACC	2 cut(s)	156, 519
AspLEI	GCGC	1 cut(s)	960
AspS9I	GGNCC	4 cut(s)	341, 371, 379, 942
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	3 cut(s)	117, 1011, 1050
AvaII	GGWCC	2 cut(s)	379, 942
BaeGI	GKGCMC	1 cut(s)	777
BalI	TGGCCA	1 cut(s)	1069
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	2 cut(s)	156, 519
BanII	GRGCYC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	24, 146
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	6 cut(s)	267, 271, 339, 682, 722, 833
BccI	CCATC	2 cut(s)	634, 1069
BciT130I	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BclI	TGATCA	1 cut(s)	1029
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	159, 586
BfaI	CTAG	1 cut(s)	489
BisI	GCNGC	7 cut(s)	260, 281, 328, 331, 696, 711, 822
BlsI	GCNGC	7 cut(s)	261, 282, 329, 332, 697, 712, 823
Bme1390I	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
Bme18I	GGWCC	2 cut(s)	379, 942
BmgT120I	GGNCC	4 cut(s)	341, 371, 379, 942
BmiI	GGNNCC	6 cut(s)	158, 380, 381, 521, 609, 943
BmrFI	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
BmsI	GCATC	1 cut(s)	904
BpiI	GAAGAC	2 cut(s)	24, 146
BpmI	CTGGAG	2 cut(s)	597, 763
Bpu10I	CCTNAGC	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	772
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	374, 534, 840
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 570, 600
Bse1I	ACTGG	1 cut(s)	618
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BseDI	CCNNGG	3 cut(s)	374, 534, 840
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	4 cut(s)	263, 284, 375, 551
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	3 cut(s)	100, 554, 650
BseSI	GKGCMC	1 cut(s)	777
BseXI	GCAGC	6 cut(s)	267, 271, 339, 682, 722, 833
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	3 cut(s)	343, 373, 1069
BshNI	GGYRCC	2 cut(s)	156, 519
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	266, 771
BslFI	GGGAC	4 cut(s)	200, 379, 392, 955
BsmAI	GTCTC	2 cut(s)	159, 586
BsmFI	GGGAC	4 cut(s)	200, 379, 392, 955
BsmI	GAATGC	2 cut(s)	427, 823
BsnI	GGCC	3 cut(s)	343, 373, 1069
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	390, 777
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	5 cut(s)	193, 427, 607, 982, 1029
BspACI	CCGC	2 cut(s)	218, 330
BspANI	GGCC	3 cut(s)	343, 373, 1069
BspCNI	CTCAG	4 cut(s)	264, 285, 376, 552
BspLI	GGNNCC	6 cut(s)	158, 380, 381, 521, 609, 943
BspPI	GGATC	4 cut(s)	201, 602, 615, 990
BspT107I	GGYRCC	2 cut(s)	156, 519
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	374, 534, 840
BssMI	GATC	5 cut(s)	193, 427, 607, 982, 1029
BssT1I	CCWWGG	1 cut(s)	840
Bst2UI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
Bst6I	CTCTTC	2 cut(s)	118, 296
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	272, 293, 384, 560
BstHHI	GCGC	1 cut(s)	960
BstKTI	GATC	5 cut(s)	196, 430, 610, 985, 1032
BstMAI	GTCTC	2 cut(s)	159, 586
BstMBI	GATC	5 cut(s)	193, 427, 607, 982, 1029
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 277, 818
BstNI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
BstSCI	CCNGG	6 cut(s)	343, 373, 534, 682, 770, 779
BstSLI	GKGCMC	1 cut(s)	777
BstV1I	GCAGC	6 cut(s)	267, 271, 339, 682, 722, 833
BstV2I	GAAGAC	2 cut(s)	24, 146
BstX2I	RGATCY	2 cut(s)	607, 982
BstYI	RGATCY	2 cut(s)	607, 982
BsuRI	GGCC	3 cut(s)	343, 373, 1069
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	611, 720
CaiI	CAGNNNCTG	2 cut(s)	292, 374
CfoI	GCGC	1 cut(s)	960
Cfr13I	GGNCC	4 cut(s)	341, 371, 379, 942
Csp6I	GTAC	3 cut(s)	157, 178, 520
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	4 cut(s)	548, 899, 961, 1092
CviQI	GTAC	3 cut(s)	157, 178, 520
DdeI	CTNAG	4 cut(s)	272, 293, 384, 560
DpnI	GATC	5 cut(s)	195, 429, 609, 984, 1031
DpnII	GATC	5 cut(s)	193, 427, 607, 982, 1029
EaeI	YGGCCR	1 cut(s)	1067
Eam1104I	CTCTTC	2 cut(s)	118, 296
EarI	CTCTTC	2 cut(s)	118, 296
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	379, 942
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	4 cut(s)	269, 591, 684, 998
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	2 cut(s)	371, 379
EcoRII	CCWGG	5 cut(s)	343, 373, 534, 682, 779
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	4 cut(s)	551, 902, 964, 1095
FaqI	GGGAC	4 cut(s)	200, 379, 392, 955
FatI	CATG	4 cut(s)	547, 898, 960, 1091
FauI	CCCGC	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	863
Fnu4HI	GCNGC	7 cut(s)	260, 281, 328, 331, 696, 711, 822
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	7 cut(s)	260, 281, 328, 331, 696, 711, 822
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	959
GluI	GCNGC	7 cut(s)	260, 281, 328, 331, 696, 711, 822
GsaI	CCCAGC	1 cut(s)	519
GsuI	CTGGAG	2 cut(s)	597, 763
HaeIII	GGCC	3 cut(s)	343, 373, 1069
HapII	CCGG	2 cut(s)	266, 771
HhaI	GCGC	1 cut(s)	960
Hin1II	CATG	4 cut(s)	551, 902, 964, 1095
Hin6I	GCGC	1 cut(s)	958
HinP1I	GCGC	1 cut(s)	958
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	3 cut(s)	230, 724, 833
HpaII	CCGG	2 cut(s)	266, 771
HphI	GGTGA	3 cut(s)	117, 1011, 1050
Hpy166II	GTNNAC	1 cut(s)	864
Hpy188I	TCNGA	4 cut(s)	59, 294, 420, 761
Hpy188III	TCNNGA	2 cut(s)	364, 391
Hpy8I	GTNNAC	1 cut(s)	864
HpyAV	CCTTC	4 cut(s)	308, 394, 778, 973
HpyCH4IV	ACGT	1 cut(s)	1025
HpyCH4V	TGCA	7 cut(s)	259, 812, 821, 895, 929, 971, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 277, 818
HpyF3I	CTNAG	4 cut(s)	272, 293, 384, 560
HpySE526I	ACGT	1 cut(s)	1025
Hsp92II	CATG	4 cut(s)	551, 902, 964, 1095
HspAI	GCGC	1 cut(s)	958
KflI	GGGWCCC	1 cut(s)	379
KpnI	GGTACC	2 cut(s)	160, 523
Ksp22I	TGATCA	1 cut(s)	1029
Kzo9I	GATC	5 cut(s)	193, 427, 607, 982, 1029
LmnI	GCTCC	3 cut(s)	268, 393, 578
Lsp1109I	GCAGC	6 cut(s)	267, 271, 339, 682, 722, 833
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	1025
MalI	GATC	5 cut(s)	195, 429, 609, 984, 1031
MboI	GATC	5 cut(s)	193, 427, 607, 982, 1029
MboII	GAAGA	7 cut(s)	24, 36, 105, 114, 151, 313, 1068
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	2 cut(s)	607, 982
MhlI	GDGCHC	2 cut(s)	390, 777
MlsI	TGGCCA	1 cut(s)	1069
MluCI	AATT	7 cut(s)	118, 188, 470, 551, 663, 996, 1010
MluNI	TGGCCA	1 cut(s)	1069
MmeI	TCCRAC	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	1069
MscI	TGGCCA	1 cut(s)	1069
MseI	TTAA	2 cut(s)	74, 731
MslI	CAYNNNNRTG	2 cut(s)	741, 1063
Msp20I	TGGCCA	1 cut(s)	1069
MspA1I	CMGCKG	3 cut(s)	330, 824, 923
MspI	CCGG	2 cut(s)	266, 771
MspR9I	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
MunI	CAATTG	1 cut(s)	188
Mva1269I	GAATGC	2 cut(s)	427, 823
MvaI	CCWGG	5 cut(s)	345, 375, 536, 684, 781
MwoI	GCNNNNNNNGC	3 cut(s)	268, 277, 818
NciI	CCSGG	1 cut(s)	772
NdeII	GATC	5 cut(s)	193, 427, 607, 982, 1029
NlaIII	CATG	4 cut(s)	551, 902, 964, 1095
NlaIV	GGNNCC	6 cut(s)	158, 380, 381, 521, 609, 943
OliI	CACNNNNGTG	1 cut(s)	1063
PctI	GAATGC	2 cut(s)	427, 823
PfeI	GAWTC	3 cut(s)	230, 724, 833
PfoI	TCCNGGA	1 cut(s)	779
PkrI	GCNGC	7 cut(s)	261, 282, 329, 332, 697, 712, 823
PpuMI	RGGWCCY	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	1025
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	5 cut(s)	343, 373, 534, 682, 779
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	5 cut(s)	343, 373, 534, 682, 779
PspN4I	GGNNCC	6 cut(s)	158, 380, 381, 521, 609, 943
PspPI	GGNCC	4 cut(s)	341, 371, 379, 942
PspPPI	RGGWCCY	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	292, 374
PsuI	RGATCY	2 cut(s)	607, 982
PvuII	CAGCTG	2 cut(s)	824, 923
RsaI	GTAC	3 cut(s)	158, 179, 521
RsaNI	GTAC	3 cut(s)	157, 178, 520
RseI	CAYNNNNRTG	2 cut(s)	741, 1063
SacI	GAGCTC	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	862
SaqAI	TTAA	2 cut(s)	74, 731
SatI	GCNGC	7 cut(s)	260, 281, 328, 331, 696, 711, 822
Sau3AI	GATC	5 cut(s)	193, 427, 607, 982, 1029
Sau96I	GGNCC	4 cut(s)	341, 371, 379, 942
ScrFI	CCNGG	6 cut(s)	345, 375, 536, 684, 772, 781
SduI	GDGCHC	2 cut(s)	390, 777
SfaNI	GCATC	1 cut(s)	904
SinI	GGWCC	2 cut(s)	379, 942
SmiMI	CAYNNNNRTG	2 cut(s)	741, 1063
Sse9I	AATT	7 cut(s)	118, 188, 470, 551, 663, 996, 1010
SsiI	CCGC	2 cut(s)	218, 330
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	6 cut(s)	343, 373, 534, 682, 770, 779
StyI	CCWWGG	1 cut(s)	840
TaiI	ACGT	1 cut(s)	1028
TaqI	TCGA	2 cut(s)	47, 863
TasI	AATT	7 cut(s)	118, 188, 470, 551, 663, 996, 1010
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	230, 724, 833
Tru1I	TTAA	2 cut(s)	74, 731
Tru9I	TTAA	2 cut(s)	74, 731
TscAI	CASTG	2 cut(s)	618, 720
TseI	GCWGC	6 cut(s)	259, 280, 327, 695, 710, 821
TspDTI	ATGAA	2 cut(s)	564, 1008
TspRI	CASTG	2 cut(s)	618, 720
VpaK11BI	GGWCC	2 cut(s)	379, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	863
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.