Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Reverse (-)

24475888 .. 24480345

Gene Structure 4458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCTTGTGAGTCGGACTCAATCTCTCTCTGCCTTCTCTTATTCCTCCACCCATTTCAGGAAACCCCATTCAGCCTCCTCCTTCAACCCCATTTCTTCTTTACGCTTCAACTCCTCTTCTTCCAATTCCTCCTCCTCCTCACCTTTTACCGAGAAGACTTCTGTCCAGAGGTACCAGCGAGACCGCTGGCTTTACCAGAACCAGCCATTGGAATTTCACCAACCCTTACACACCCCCTGCTGCTCTCTCCCGCCCGATTTTAATTCTCTGAGGGAAAACGACATCGCTTTGCAGCTACCCGAGCTCAGGAAGCTGCTTCAGGTGCTCAGAGAAAAGAGGCACACAGAAGGTGACCGAGGCAGTTGTGGGCCCGGCAATGTCTTCCTGGTCGGTACAGGGCCTGGGGACCCTGAGCTCCTCACAATGAAGGCTTACAGAGTAATTCAGACTGCTGACTTGTTGCTGTATGATAGGTTGGTGTCCAATGATGTCTTGGAATTGGTTGCCTCTGGTGCTAGACTTCTATATGTGGGTAAGACTGCTGGGTACCATAGCAGAACCCAGGAAGAGATACATGAATTGTTACTCGGTTTTGCCGAAGCTGGAGCTAATGTTGTGAGACTAAAAGGAGGGGATCCGCTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTCTGCGACAACAAGGAATTGAAGTTAACGTTATTGTTGGAGTATTACTGCTGCTTCAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

247

Amino Acids

27.28

Weight (kDa)

7.06

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	174, 549
AccB1I	GGYRCC	2 cut(s)	174, 549
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	3 cut(s)	187, 254, 641
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	2 cut(s)	632, 645
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	2 cut(s)	305, 716
AfaI	GTAC	3 cut(s)	176, 397, 551
AfiI	CCNNNNNNNGG	3 cut(s)	60, 211, 309
AgsI	TTSAA	3 cut(s)	88, 112, 698
AjnI	CCWGG	3 cut(s)	387, 403, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	6 cut(s)	298, 307, 316, 418, 605, 611
AluI	AGCT	6 cut(s)	298, 307, 316, 418, 605, 611
Alw21I	GWGCWC	3 cut(s)	309, 330, 420
Alw26I	GTCTC	2 cut(s)	177, 616
AlwI	GGATC	2 cut(s)	632, 645
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	371, 401
ApaI	GGGCCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	243, 295, 316, 727
ApoI	RAATTY	1 cut(s)	215
Asp718I	GGTACC	2 cut(s)	174, 549
AspS9I	GGNCC	4 cut(s)	371, 372, 401, 409
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	135, 212, 365
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	375
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	2 cut(s)	174, 549
BanII	GRGCYC	3 cut(s)	309, 375, 420
BbsI	GAAGAC	2 cut(s)	164, 376
Bbv12I	GWGCWC	3 cut(s)	309, 330, 420
BbvI	GCAGC	4 cut(s)	230, 303, 307, 714
BccI	CCATC	1 cut(s)	664
BciT130I	CCWGG	3 cut(s)	389, 405, 566
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	177, 616
BfaI	CTAG	1 cut(s)	519
BisI	GCNGC	4 cut(s)	244, 296, 317, 728
BlsI	GCNGC	4 cut(s)	245, 297, 318, 729
Bme1390I	CCNGG	4 cut(s)	375, 389, 405, 566
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	371, 372, 401, 409
BmiI	GGNNCC	6 cut(s)	176, 373, 410, 411, 551, 639
BmrFI	CCNGG	4 cut(s)	375, 389, 405, 566
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	2 cut(s)	164, 376
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	2 cut(s)	308, 414
BpuMI	CCSGG	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	358, 404, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 211, 309
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	3 cut(s)	389, 405, 566
BseDI	CCNNGG	3 cut(s)	358, 404, 564
BseLI	CCNNNNNNNGG	3 cut(s)	60, 211, 309
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	4 cut(s)	263, 322, 343, 405
BseRI	GAGGAG	7 cut(s)	70, 106, 124, 127, 130, 410, 680
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	230, 303, 307, 714
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	2 cut(s)	373, 403
BshNI	GGYRCC	2 cut(s)	174, 549
BsiHKAI	GWGCWC	3 cut(s)	309, 330, 420
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	60, 211, 309
BsmAI	GTCTC	2 cut(s)	177, 616
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	373, 403
Bso31I	GGTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	302
Bsp120I	GGGCCC	1 cut(s)	371
Bsp1286I	GDGCHC	4 cut(s)	309, 330, 375, 420
Bsp143I	GATC	1 cut(s)	637
BspACI	CCGC	3 cut(s)	187, 254, 641
BspANI	GGCC	2 cut(s)	373, 403
BspCNI	CTCAG	4 cut(s)	264, 321, 342, 406
BspLI	GGNNCC	6 cut(s)	176, 373, 410, 411, 551, 639
BspPI	GGATC	2 cut(s)	632, 645
BspT107I	GGYRCC	2 cut(s)	174, 549
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	358, 404, 564
BssMI	GATC	1 cut(s)	637
Bst2UI	CCWGG	3 cut(s)	389, 405, 566
Bst6I	CTCTTC	2 cut(s)	124, 564
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	4 cut(s)	272, 308, 329, 414
BstEII	GGTNACC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	2 cut(s)	177, 616
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 313, 325, 515
BstNI	CCWGG	3 cut(s)	389, 405, 566
BstPAI	GACNNNNGTC	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	4 cut(s)	373, 387, 403, 564
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	230, 303, 307, 714
BstV2I	GAAGAC	2 cut(s)	164, 376
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	373, 403
BtgZI	GCGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	4 cut(s)	371, 372, 401, 409
Csp6I	GTAC	3 cut(s)	175, 396, 550
CviAII	CATG	1 cut(s)	578
CviQI	GTAC	3 cut(s)	175, 396, 550
DdeI	CTNAG	4 cut(s)	272, 308, 329, 414
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	124, 564
EarI	CTCTTC	2 cut(s)	124, 564
Ecl136II	GAGCTC	2 cut(s)	307, 418
Eco24I	GRGCYC	3 cut(s)	309, 375, 420
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	2 cut(s)	307, 418
Eco57I	CTGAAG	2 cut(s)	305, 716
Eco88I	CYCGRG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	353
EcoICRI	GAGCTC	2 cut(s)	307, 418
EcoO109I	RGGNCCY	2 cut(s)	401, 409
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	387, 403, 564
EcoT38I	GRGCYC	3 cut(s)	309, 375, 420
FaeI	CATG	1 cut(s)	581
FaiI	YATR	5 cut(s)	471, 529, 531, 555, 579
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	1 cut(s)	577
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	244, 296, 317, 728
FriOI	GRGCYC	3 cut(s)	309, 375, 420
Fsp4HI	GCNGC	4 cut(s)	244, 296, 317, 728
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	4 cut(s)	244, 296, 317, 728
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	373, 403
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	1 cut(s)	581
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	2 cut(s)	13, 19
HpaI	GTTAAC	1 cut(s)	703
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	3 cut(s)	135, 212, 365
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	4 cut(s)	18, 273, 332, 450
Hpy188III	TCNNGA	3 cut(s)	61, 169, 310
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	5 cut(s)	46, 94, 344, 424, 648
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 313, 325, 515
HpyF3I	CTNAG	4 cut(s)	272, 308, 329, 414
HpySE526I	ACGT	1 cut(s)	705
Hsp92II	CATG	1 cut(s)	581
KflI	GGGWCCC	1 cut(s)	409
KpnI	GGTACC	2 cut(s)	178, 553
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	2 cut(s)	423, 608
Lsp1109I	GCAGC	4 cut(s)	230, 303, 307, 714
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	353, 585
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	6 cut(s)	90, 111, 114, 169, 376, 581
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	4 cut(s)	309, 330, 375, 420
MluCI	AATT	7 cut(s)	127, 215, 265, 444, 500, 581, 693
MlyI	GAGTC	2 cut(s)	13, 22
MmeI	TCCRAC	1 cut(s)	694
MseI	TTAA	2 cut(s)	264, 702
MspA1I	CMGCKG	2 cut(s)	189, 643
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	4 cut(s)	375, 389, 405, 566
MvaI	CCWGG	3 cut(s)	389, 405, 566
MwoI	GCNNNNNNNGC	4 cut(s)	304, 313, 325, 515
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	637
NlaIII	CATG	1 cut(s)	581
NlaIV	GGNNCC	6 cut(s)	176, 373, 410, 411, 551, 639
NmuCI	GTSAC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	245, 297, 318, 729
PleI	GAGTC	2 cut(s)	13, 21
PpsI	GAGTC	2 cut(s)	13, 21
PpuMI	RGGWCCY	1 cut(s)	409
PshAI	GACNNNNGTC	1 cut(s)	164
Psp124BI	GAGCTC	2 cut(s)	309, 420
Psp1406I	AACGTT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	387, 403, 564
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	3 cut(s)	387, 403, 564
PspN4I	GGNNCC	6 cut(s)	176, 373, 410, 411, 551, 639
PspOMI	GGGCCC	1 cut(s)	371
PspPI	GGNCC	4 cut(s)	371, 372, 401, 409
PspPPI	RGGWCCY	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	3 cut(s)	176, 397, 551
RsaNI	GTAC	3 cut(s)	175, 396, 550
SacI	GAGCTC	2 cut(s)	309, 420
SaqAI	TTAA	2 cut(s)	264, 702
SatI	GCNGC	4 cut(s)	244, 296, 317, 728
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	4 cut(s)	371, 372, 401, 409
SchI	GAGTC	2 cut(s)	13, 22
ScrFI	CCNGG	4 cut(s)	375, 389, 405, 566
SduI	GDGCHC	4 cut(s)	309, 330, 375, 420
SinI	GGWCC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	127, 215, 265, 444, 500, 581, 693
SsiI	CCGC	3 cut(s)	187, 254, 641
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	2 cut(s)	309, 420
StyD4I	CCNGG	4 cut(s)	373, 387, 403, 564
TaiI	ACGT	1 cut(s)	708
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	7 cut(s)	127, 215, 265, 444, 500, 581, 693
Tru1I	TTAA	2 cut(s)	264, 702
Tru9I	TTAA	2 cut(s)	264, 702
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	4 cut(s)	243, 295, 316, 727
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	443, 594
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.