Rh6CG227900

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002225
Physical Location & Seq
Reverse (-)
38237978 .. 38243171
5194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG227900.1

Sequence Viewer

Length: 714 bp
ATGGCTCTTGTGAGTAGGCTTCAATCTCTGTCTTCCTCTTTGTCTTCCACCCATTTCAGAAAACCCAACTGCTTAAACCCTGAACCCATTTGCTCTCTACACTTCAACTCCCCTTCTTACACTTCTCCTTTTACAGAGAAGCATTCAATTGAGAGGTACCAGAGAGACCGGTGGCTATACAATAACCAATTGGAGCAACCCACTCTAATCTCTCTCCCTCCTGATTCTGATTCTGATTTCACAAGGCAGAATGACATTGCTTTGCAGCTACCAGAGCTGAGAAAGCTGCTTCAGGTGCTGCGAGAGAAGAGAGAGAGGGAAGGAGGGTGTGGTGGAGGCAAGTGTGGGCCTGGCAATGTCTTCTTGGTGGGCACTGGCCCTGGGGACCCTGAACTCCTGACATTGAAGGCTGTCAGAGTTATTCAGAGTGCTGATTTATTGTTGTATGATAGGTTGGTGTCCAATGATGTCTTGGATTTTGTTGCCTCTGATGCCAGACTTGTCTATCTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATACATGAATTGCTACTGAGTTTTGCTGAAGCCGGAGCTACTGTTGTGAGATTAAAAGGAGGGGATCCACTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAACAGCAAGGAATTCAAGTGCAAGTTATTCCTGGTACAATAATGAATCAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

237

Amino Acids

26.37

Weight (kDa)

5.76

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 120 - 231 3.5e-30 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 156, 525
AccB1I GGYRCC 2 cut(s) 156, 525
AclWI GGATC 2 cut(s) 608, 621
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 2 cut(s) 275, 597
AfaI GTAC 3 cut(s) 158, 527, 694
AgeI ACCGGT 1 cut(s) 168
AgsI TTSAA 5 cut(s) 23, 106, 147, 406, 674
AjnI CCWGG 4 cut(s) 349, 379, 540, 688
AluBI AGCT 4 cut(s) 268, 277, 286, 587
AluI AGCT 4 cut(s) 268, 277, 286, 587
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 608, 621
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 2 cut(s) 347, 376
ApeKI GCWGC 3 cut(s) 265, 286, 298
ApoI RAATTY 1 cut(s) 669
AsiGI ACCGGT 1 cut(s) 168
Asp718I GGTACC 2 cut(s) 156, 525
AspS9I GGNCC 3 cut(s) 347, 377, 385
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 374
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 2 cut(s) 156, 525
BbsI GAAGAC 3 cut(s) 24, 36, 352
BbvI GCAGC 3 cut(s) 273, 277, 285
BccI CCATC 1 cut(s) 640
BciT130I CCWGG 4 cut(s) 351, 381, 542, 690
BcoDI GTCTC 1 cut(s) 159
BisI GCNGC 3 cut(s) 266, 287, 299
BlsI GCNGC 3 cut(s) 267, 288, 300
Bme1390I CCNGG 4 cut(s) 351, 381, 542, 690
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 347, 377, 385
BmiI GGNNCC 5 cut(s) 158, 386, 387, 527, 615
BmrFI CCNGG 4 cut(s) 351, 381, 542, 690
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 3 cut(s) 24, 36, 352
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 379, 380, 540
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 576, 606
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 379, 624
Bse3DI GCAATG 2 cut(s) 255, 361
BseBI CCWGG 4 cut(s) 351, 381, 542, 690
BseDI CCNNGG 3 cut(s) 379, 380, 540
BseMI GCAATG 2 cut(s) 255, 361
BseMII CTCAG 2 cut(s) 269, 557
BseNI ACTGG 2 cut(s) 379, 624
BseRI GAGGAG 2 cut(s) 560, 656
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 3 cut(s) 273, 277, 285
BseYI CCCAGC 1 cut(s) 521
BshFI GGCC 2 cut(s) 349, 378
BshNI GGYRCC 2 cut(s) 156, 525
BshTI ACCGGT 1 cut(s) 168
BsiSI CCGG 2 cut(s) 169, 582
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 349, 378
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 613
BspANI GGCC 2 cut(s) 349, 378
BspCNI CTCAG 2 cut(s) 270, 558
BspLI GGNNCC 5 cut(s) 158, 386, 387, 527, 615
BspPI GGATC 2 cut(s) 608, 621
BspT107I GGYRCC 2 cut(s) 156, 525
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 255, 361
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 2 cut(s) 379, 624
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 3 cut(s) 379, 380, 540
BssMI GATC 1 cut(s) 613
Bst2UI CCWGG 4 cut(s) 351, 381, 542, 690
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 278, 566
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 4 cut(s) 274, 283, 295, 491
BstNI CCWGG 4 cut(s) 351, 381, 542, 690
BstSCI CCNGG 4 cut(s) 349, 379, 540, 688
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 3 cut(s) 273, 277, 285
BstV2I GAAGAC 3 cut(s) 24, 36, 352
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BsuRI GGCC 2 cut(s) 349, 378
BtsIMutI CAGTG 2 cut(s) 372, 617
CaiI CAGNNNCTG 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 347, 377, 385
Csp6I GTAC 3 cut(s) 157, 526, 693
CspAI ACCGGT 1 cut(s) 168
CviAII CATG 1 cut(s) 554
CviQI GTAC 3 cut(s) 157, 526, 693
DdeI CTNAG 2 cut(s) 278, 566
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 275, 597
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 4 cut(s) 349, 379, 540, 688
FaeI CATG 1 cut(s) 557
FaiI YATR 4 cut(s) 178, 447, 531, 555
FaqI GGGAC 1 cut(s) 398
FatI CATG 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 266, 287, 299
Fsp4HI GCNGC 3 cut(s) 266, 287, 299
GluI GCNGC 3 cut(s) 266, 287, 299
GsaI CCCAGC 1 cut(s) 525
HaeIII GGCC 2 cut(s) 349, 378
HapII CCGG 2 cut(s) 169, 582
Hin1II CATG 1 cut(s) 557
HinfI GANTC 3 cut(s) 224, 230, 703
HpaII CCGG 2 cut(s) 169, 582
Hpy188I TCNGA 6 cut(s) 59, 229, 235, 416, 426, 490
Hpy188III TCNNGA 2 cut(s) 221, 397
HpyAV CCTTC 4 cut(s) 123, 314, 400, 624
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4V TGCA 3 cut(s) 265, 658, 679
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 283, 295, 491
HpyF3I CTNAG 2 cut(s) 278, 566
Hsp92II CATG 1 cut(s) 557
KflI GGGWCCC 1 cut(s) 385
KpnI GGTACC 2 cut(s) 160, 529
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 2 cut(s) 193, 584
Lsp1109I GCAGC 3 cut(s) 273, 277, 285
LweI GCATC 1 cut(s) 481
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MboII GAAGA 4 cut(s) 24, 36, 319, 352
MfeI CAATTG 2 cut(s) 147, 188
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 4 cut(s) 147, 188, 557, 669
MseI TTAA 2 cut(s) 74, 602
MspI CCGG 2 cut(s) 169, 582
MspR9I CCNGG 4 cut(s) 351, 381, 542, 690
MunI CAATTG 2 cut(s) 147, 188
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 4 cut(s) 351, 381, 542, 690
MwoI GCNNNNNNNGC 4 cut(s) 274, 283, 295, 491
NdeII GATC 1 cut(s) 613
NlaIII CATG 1 cut(s) 557
NlaIV GGNNCC 5 cut(s) 158, 386, 387, 527, 615
PasI CCCWGGG 1 cut(s) 380
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 3 cut(s) 224, 230, 703
PinAI ACCGGT 1 cut(s) 168
PkrI GCNGC 3 cut(s) 267, 288, 300
PpuMI RGGWCCY 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 4 cut(s) 349, 379, 540, 688
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 4 cut(s) 349, 379, 540, 688
PspN4I GGNNCC 5 cut(s) 158, 386, 387, 527, 615
PspPI GGNCC 3 cut(s) 347, 377, 385
PspPPI RGGWCCY 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 613
RsaI GTAC 3 cut(s) 158, 527, 694
RsaNI GTAC 3 cut(s) 157, 526, 693
SaqAI TTAA 2 cut(s) 74, 602
SatI GCNGC 3 cut(s) 266, 287, 299
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 3 cut(s) 347, 377, 385
ScrFI CCNGG 4 cut(s) 351, 381, 542, 690
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 158, 270, 279, 288, 297, 455, 589
SfaNI GCATC 1 cut(s) 481
SinI GGWCC 1 cut(s) 385
Sse9I AATT 4 cut(s) 147, 188, 557, 669
StyD4I CCNGG 4 cut(s) 349, 379, 540, 688
TaaI ACNGT 1 cut(s) 592
TasI AATT 4 cut(s) 147, 188, 557, 669
TfiI GAWTC 3 cut(s) 224, 230, 703
Tru1I TTAA 2 cut(s) 74, 602
Tru9I TTAA 2 cut(s) 74, 602
TscAI CASTG 2 cut(s) 379, 624
TseI GCWGC 3 cut(s) 265, 286, 298
TspDTI ATGAA 1 cut(s) 570
TspRI CASTG 2 cut(s) 379, 624
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.