Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008256.1

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Forward (+)

6556 .. 7645

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008256.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggctcttgtcagtaggcttcaatctctgtcttcctctttgtcttccacccatttcagaaaacccagttccttaaaccctcaacccatttgctccctacacttcaacaactccccttcttacacttctccttttacagagaagcattctattgagagataccagagagaccagtggctatacaataaccaattggaacagcccactctattctctgatgatgctgattctgatctcacaaggcagaatgacattgctttgcagctaccagagctgagaaagctgcttcaggtgctaagagagaagagagagagggaaggagggtgtggtggaggaggaggcaagtgtgggcctggcaatgtcttcttggtcggcactggccctggggaccctgaactcctcacattgaaggctgtcagagttgtacagagtgctgatttattgttgtatgataggttggtgtccaatcatgtgttggattttgttgcctctgatgctagacttgtctatgtgggcaagactgctgggtaccatagcagaacccaggaggagatacatgaactgctactgagttttgctgaagctggagctactgttgtgagactaaaaggaggggatccactggtgtttggaaggggtggagaggagatggattttttgcaacagcaaggaattcgagtgcaagttattccaggtacaataatgaatcagtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

238

Amino Acids

26.34

Weight (kDa)

6.08

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AclWI	GGATC	2 cut(s)	611, 624
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	2 cut(s)	272, 600
AfaI	GTAC	3 cut(s)	426, 530, 697
AgsI	TTSAA	3 cut(s)	23, 106, 409
AjnI	CCWGG	4 cut(s)	352, 382, 543, 691
AluBI	AGCT	5 cut(s)	265, 274, 283, 584, 590
AluI	AGCT	5 cut(s)	265, 274, 283, 584, 590
Alw26I	GTCTC	2 cut(s)	162, 595
AlwI	GGATC	2 cut(s)	611, 624
AoxI	GGCC	2 cut(s)	350, 379
ApeKI	GCWGC	2 cut(s)	262, 283
ApoI	RAATTY	1 cut(s)	672
Asp718I	GGTACC	1 cut(s)	528
AspS9I	GGNCC	3 cut(s)	350, 380, 388
AvaII	GGWCC	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	528
BbsI	GAAGAC	3 cut(s)	24, 36, 355
BbvI	GCAGC	2 cut(s)	270, 274
BccI	CCATC	1 cut(s)	643
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	4 cut(s)	354, 384, 545, 693
BcoDI	GTCTC	2 cut(s)	162, 595
BfaI	CTAG	1 cut(s)	498
BisI	GCNGC	2 cut(s)	263, 284
BlsI	GCNGC	2 cut(s)	264, 285
Bme1390I	CCNGG	4 cut(s)	354, 384, 545, 693
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	350, 380, 388
BmiI	GGNNCC	4 cut(s)	389, 390, 530, 618
BmrFI	CCNGG	4 cut(s)	354, 384, 545, 693
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	211, 484
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	3 cut(s)	24, 36, 355
BpmI	CTGGAG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	382, 383, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bse1I	ACTGG	4 cut(s)	66, 172, 382, 627
Bse3DI	GCAATG	2 cut(s)	252, 364
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	4 cut(s)	354, 384, 545, 693
BseDI	CCNNGG	3 cut(s)	382, 383, 543
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	252, 364
BseMII	CTCAG	2 cut(s)	266, 560
BseNI	ACTGG	4 cut(s)	66, 172, 382, 627
BseRI	GAGGAG	5 cut(s)	348, 351, 389, 563, 659
BseXI	GCAGC	2 cut(s)	270, 274
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	2 cut(s)	352, 381
BshNI	GGYRCC	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	2 cut(s)	162, 595
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	352, 381
Bso31I	GGTCTC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	232, 616
BspANI	GGCC	2 cut(s)	352, 381
BspCNI	CTCAG	2 cut(s)	267, 561
BspLI	GGNNCC	4 cut(s)	389, 390, 530, 618
BspPI	GGATC	2 cut(s)	611, 624
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	252, 364
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	4 cut(s)	66, 172, 382, 627
BssECI	CCNNGG	3 cut(s)	382, 383, 543
BssMI	GATC	2 cut(s)	232, 616
Bst2UI	CCWGG	4 cut(s)	354, 384, 545, 693
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	275, 296, 569
BstKTI	GATC	2 cut(s)	235, 619
BstMAI	GTCTC	2 cut(s)	162, 595
BstMBI	GATC	2 cut(s)	232, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 280, 292, 494
BstNI	CCWGG	4 cut(s)	354, 384, 545, 693
BstSCI	CCNGG	4 cut(s)	352, 382, 543, 691
BstV1I	GCAGC	2 cut(s)	270, 274
BstV2I	GAAGAC	3 cut(s)	24, 36, 355
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	352, 381
BtsIMutI	CAGTG	3 cut(s)	179, 375, 620
Cfr13I	GGNCC	3 cut(s)	350, 380, 388
Csp6I	GTAC	3 cut(s)	425, 529, 696
CviAII	CATG	2 cut(s)	470, 557
CviQI	GTAC	3 cut(s)	425, 529, 696
DdeI	CTNAG	3 cut(s)	275, 296, 569
DpnI	GATC	2 cut(s)	234, 618
DpnII	GATC	2 cut(s)	232, 616
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	272, 600
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	4 cut(s)	352, 382, 543, 691
FaeI	CATG	2 cut(s)	473, 560
FaiI	YATR	6 cut(s)	181, 450, 471, 510, 534, 558
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	2 cut(s)	469, 556
Fnu4HI	GCNGC	2 cut(s)	263, 284
Fsp4HI	GCNGC	2 cut(s)	263, 284
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	2 cut(s)	263, 284
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	352, 381
Hin1II	CATG	2 cut(s)	473, 560
HinfI	GANTC	2 cut(s)	227, 706
Hpy188I	TCNGA	5 cut(s)	59, 217, 232, 419, 493
HpyAV	CCTTC	4 cut(s)	126, 311, 403, 627
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	262, 661, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 280, 292, 494
HpyF3I	CTNAG	3 cut(s)	275, 296, 569
Hsp92II	CATG	2 cut(s)	473, 560
KflI	GGGWCCC	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	232, 616
LmnI	GCTCC	2 cut(s)	98, 587
Lsp1109I	GCAGC	2 cut(s)	270, 274
LweI	GCATC	2 cut(s)	211, 484
MaeI	CTAG	1 cut(s)	498
MalI	GATC	2 cut(s)	234, 618
MboI	GATC	2 cut(s)	232, 616
MboII	GAAGA	4 cut(s)	24, 36, 316, 355
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	2 cut(s)	191, 672
MmeI	TCCRAC	1 cut(s)	456
MseI	TTAA	1 cut(s)	74
MspR9I	CCNGG	4 cut(s)	354, 384, 545, 693
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	4 cut(s)	354, 384, 545, 693
MwoI	GCNNNNNNNGC	4 cut(s)	271, 280, 292, 494
NdeII	GATC	2 cut(s)	232, 616
NlaIII	CATG	2 cut(s)	473, 560
NlaIV	GGNNCC	4 cut(s)	389, 390, 530, 618
PasI	CCCWGGG	1 cut(s)	383
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	227, 706
PkrI	GCNGC	2 cut(s)	264, 285
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	352, 382, 543, 691
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	4 cut(s)	352, 382, 543, 691
PspN4I	GGNNCC	4 cut(s)	389, 390, 530, 618
PspPI	GGNCC	3 cut(s)	350, 380, 388
PspPPI	RGGWCCY	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	3 cut(s)	426, 530, 697
RsaNI	GTAC	3 cut(s)	425, 529, 696
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	263, 284
Sau3AI	GATC	2 cut(s)	232, 616
Sau96I	GGNCC	3 cut(s)	350, 380, 388
ScrFI	CCNGG	4 cut(s)	354, 384, 545, 693
SetI	ASST	8 cut(s)	267, 276, 285, 294, 458, 586, 592, 697
SfaNI	GCATC	2 cut(s)	211, 484
SinI	GGWCC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	191, 672
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	352, 382, 543, 691
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	676
TasI	AATT	2 cut(s)	191, 672
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	227, 706
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	3 cut(s)	179, 382, 627
TseI	GCWGC	2 cut(s)	262, 283
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	3 cut(s)	179, 382, 627
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.