Rw1G000410

Belongs to the precorrin methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002225
Physical Location & Seq
Reverse (-)
712588 .. 717127
4540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000410.1

Sequence Viewer

Length: 1122 bp
ATGGCTCTTGTCAGTAGGCTTCAATCTCTGTCTTCCTCTTTGTCTTCCACCCATTTCAGAAAACCCAATTCCTTAAACCCTCAACCCATTTGCTCCCTACACTTCAACAACTCCCCTTCTTACACTTCTCCTTTTACAGAGAAGCATTCTATTGAGAGGTACCAGAGAGACCAGTGGCTATACAATAACCAATTGGAGCAGCCCACTCTATTCTCTGATGATGCTGATTCTGATCTCACAAGGCAGAATGACATTGCTTTGCAGCTACCAGAGCTGAGAAAGCTGCTTCAGGTGCTAAGAGAGAAGAGAGAGAGGGAAGGAGGGTGTGGTGGAGGAGGAGGCAAGTGTGGGCCTGGCAATGTCTTCTTGGTCGGCACTGGCCCTGGGGACCCTGAACTCCTCACATTGAAGGCTGTCAGAGTTGTACAGAGTGCTGATTTATTGTTGTATGATAGGTTGGTGTCCAATCATGTGTTGGATTTTGTTGCCTCTGATGCTAGACTTGTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGAGGAGATACATGAACTGCTACTGAGTTTTGCTGAAGCTGGAGCTACTGTTGTGAGACTAAAAGGAGGGGATCCACTGGTGTTTGGAAGGGGTGGAGAGGAGATGGATTTTTTGCAACAGCAAGGAATTCGAGTGCAAGTTATTCCAGGTATCACTGCTGCTTCTGGGATAGCAGCAGAGCTAGGGATCCCATTAACTCACAGAGGTGTTGCAAATAGTGTAAGATTTCTGACCGGGCACTCCAGGAAGGGAGGAACCGATCCTCTTTTTGTGGCAGAGAATGCAGCTGACCCTGATTCAACCTTGGTGGTATACATGGGTTTGTCGACTCTCCCTTCTCTTGCTCAAAAGTTGGTCCATCATGGTCTGCCACCAACAACACCAGCTGTTGCAGTTGAGCGAGGGACCACACCTCAACAGCGCATGGTCTTTGCAGAACTGAAGGATCTTGCCAATGAAATTACATTAGCAGAGTTAGTATCACCAACGCTCATCGTCATTGGGAAAGTAGTTGCACTTTCACCATTGTGGCCACATACTTTGAACGAAGTGGCTGCTCTTGTCGGAGCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
TP_methylase

Protein Analysis

373

Amino Acids

40.27

Weight (kDa)

6.13

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP_methylase PF00590 121 - 333 2.4e-51 Tetrapyrrole (Corrin/Porphyrin) Methylases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 159, 528
AccB1I GGYRCC 2 cut(s) 159, 528
AccI GTMKAC 2 cut(s) 858, 872
AclWI GGATC 6 cut(s) 611, 624, 727, 740, 800, 999
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 1 cut(s) 672
AcuI CTGAAG 3 cut(s) 272, 600, 1007
AfaI GTAC 3 cut(s) 161, 426, 530
AgsI TTSAA 5 cut(s) 23, 106, 409, 846, 1090
AjnI CCWGG 5 cut(s) 352, 382, 543, 691, 788
AleI CACNNNNGTG 2 cut(s) 750, 1072
AluBI AGCT 8 cut(s) 265, 274, 283, 584, 590, 727, 833, 932
AluI AGCT 8 cut(s) 265, 274, 283, 584, 590, 727, 833, 932
Alw26I GTCTC 2 cut(s) 162, 595
AlwI GGATC 6 cut(s) 611, 624, 727, 740, 800, 999
AoxI GGCC 3 cut(s) 350, 379, 1076
ApeKI GCWGC 7 cut(s) 199, 262, 283, 704, 719, 830, 1100
ApoI RAATTY 1 cut(s) 672
Asp718I GGTACC 2 cut(s) 159, 528
AspLEI GCGC 1 cut(s) 969
AspS9I GGNCC 5 cut(s) 350, 380, 388, 901, 951
AsuC2I CCSGG 1 cut(s) 781
AsuHPI GGTGA 2 cut(s) 1020, 1059
AvaII GGWCC 3 cut(s) 388, 901, 951
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 1078
BamHI GGATCC 2 cut(s) 616, 732
BanI GGYRCC 2 cut(s) 159, 528
BbsI GAAGAC 3 cut(s) 24, 36, 355
BbvI GCAGC 7 cut(s) 211, 270, 274, 691, 731, 842, 1087
BccI CCATC 2 cut(s) 643, 912
BcgI CGANNNNNNTGC 4 cut(s) 656, 690, 1082, 1116
BciT130I CCWGG 5 cut(s) 354, 384, 545, 693, 790
BcnI CCSGG 1 cut(s) 781
BcoDI GTCTC 2 cut(s) 162, 595
BfaI CTAG 2 cut(s) 498, 728
BisI GCNGC 7 cut(s) 200, 263, 284, 705, 720, 831, 1101
BlsI GCNGC 7 cut(s) 201, 264, 285, 706, 721, 832, 1102
Bme1390I CCNGG 6 cut(s) 354, 384, 545, 693, 781, 790
Bme18I GGWCC 3 cut(s) 388, 901, 951
BmgT120I GGNCC 5 cut(s) 350, 380, 388, 901, 951
BmiI GGNNCC 9 cut(s) 161, 389, 390, 530, 618, 734, 802, 952, 1114
BmrFI CCNGG 6 cut(s) 354, 384, 545, 693, 781, 790
BmsI GCATC 2 cut(s) 211, 484
BpiI GAAGAC 3 cut(s) 24, 36, 355
BpmI CTGGAG 2 cut(s) 606, 772
BpuMI CCSGG 1 cut(s) 781
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 382, 383, 543, 849
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bse1I ACTGG 3 cut(s) 172, 382, 627
Bse3DI GCAATG 2 cut(s) 252, 364
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 5 cut(s) 354, 384, 545, 693, 790
BseDI CCNNGG 4 cut(s) 382, 383, 543, 849
BseJI GATNNNNATC 1 cut(s) 231
BseMI GCAATG 2 cut(s) 252, 364
BseMII CTCAG 2 cut(s) 266, 560
BseNI ACTGG 3 cut(s) 172, 382, 627
BseRI GAGGAG 5 cut(s) 348, 351, 389, 563, 659
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 7 cut(s) 211, 270, 274, 691, 731, 842, 1087
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 3 cut(s) 352, 381, 1078
BshNI GGYRCC 2 cut(s) 159, 528
BsiSI CCGG 1 cut(s) 780
BslFI GGGAC 2 cut(s) 401, 964
BsmAI GTCTC 2 cut(s) 162, 595
BsmFI GGGAC 2 cut(s) 401, 964
BsmI GAATGC 2 cut(s) 145, 832
BsnI GGCC 3 cut(s) 352, 381, 1078
Bso31I GGTCTC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 786
Bsp1407I TGTACA 1 cut(s) 424
Bsp143I GATC 5 cut(s) 232, 616, 732, 805, 991
BspANI GGCC 3 cut(s) 352, 381, 1078
BspCNI CTCAG 2 cut(s) 267, 561
BspLI GGNNCC 9 cut(s) 161, 389, 390, 530, 618, 734, 802, 952, 1114
BspPI GGATC 6 cut(s) 611, 624, 727, 740, 800, 999
BspT107I GGYRCC 2 cut(s) 159, 528
BspTNI GGTCTC 1 cut(s) 162
BsrDI GCAATG 2 cut(s) 252, 364
BsrGI TGTACA 1 cut(s) 424
BsrI ACTGG 3 cut(s) 172, 382, 627
BssECI CCNNGG 4 cut(s) 382, 383, 543, 849
BssMI GATC 5 cut(s) 232, 616, 732, 805, 991
BssNAI GTATAC 1 cut(s) 859
BssT1I CCWWGG 1 cut(s) 849
Bst1107I GTATAC 1 cut(s) 859
Bst2UI CCWGG 5 cut(s) 354, 384, 545, 693, 790
Bst4CI ACNGT 1 cut(s) 595
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 827
BstAUI TGTACA 1 cut(s) 424
BstDEI CTNAG 3 cut(s) 275, 296, 569
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 5 cut(s) 235, 619, 735, 808, 994
BstMAI GTCTC 2 cut(s) 162, 595
BstMBI GATC 5 cut(s) 232, 616, 732, 805, 991
BstMWI GCNNNNNNNGC 5 cut(s) 271, 280, 292, 494, 827
BstNI CCWGG 5 cut(s) 354, 384, 545, 693, 790
BstSCI CCNGG 6 cut(s) 352, 382, 543, 691, 779, 788
BstSLI GKGCMC 1 cut(s) 786
BstV1I GCAGC 7 cut(s) 211, 270, 274, 691, 731, 842, 1087
BstV2I GAAGAC 3 cut(s) 24, 36, 355
BstX2I RGATCY 3 cut(s) 616, 732, 991
BstYI RGATCY 3 cut(s) 616, 732, 991
BstZ17I GTATAC 1 cut(s) 859
BsuRI GGCC 3 cut(s) 352, 381, 1078
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 4 cut(s) 179, 375, 620, 699
CfoI GCGC 1 cut(s) 969
Cfr13I GGNCC 5 cut(s) 350, 380, 388, 901, 951
Csp6I GTAC 3 cut(s) 160, 425, 529
CspCI CAANNNNNGTGG 4 cut(s) 834, 869, 1068, 1103
CviAII CATG 5 cut(s) 470, 557, 862, 908, 970
CviQI GTAC 3 cut(s) 160, 425, 529
DdeI CTNAG 3 cut(s) 275, 296, 569
DpnI GATC 5 cut(s) 234, 618, 734, 807, 993
DpnII GATC 5 cut(s) 232, 616, 732, 805, 991
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 849
Eco31I GGTCTC 1 cut(s) 162
Eco47I GGWCC 3 cut(s) 388, 901, 951
Eco57I CTGAAG 3 cut(s) 272, 600, 1007
EcoO109I RGGNCCY 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 672
EcoRII CCWGG 5 cut(s) 352, 382, 543, 691, 788
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 5 cut(s) 473, 560, 865, 911, 973
FaqI GGGAC 2 cut(s) 401, 964
FatI CATG 5 cut(s) 469, 556, 861, 907, 969
FblI GTMKAC 2 cut(s) 858, 872
Fnu4HI GCNGC 7 cut(s) 200, 263, 284, 705, 720, 831, 1101
Fsp4HI GCNGC 7 cut(s) 200, 263, 284, 705, 720, 831, 1101
FspBI CTAG 2 cut(s) 498, 728
GlaI GCGC 1 cut(s) 968
GluI GCNGC 7 cut(s) 200, 263, 284, 705, 720, 831, 1101
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 2 cut(s) 606, 772
HaeIII GGCC 3 cut(s) 352, 381, 1078
HapII CCGG 1 cut(s) 780
HhaI GCGC 1 cut(s) 969
Hin1II CATG 5 cut(s) 473, 560, 865, 911, 973
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HincII GTYRAC 1 cut(s) 873
HindII GTYRAC 1 cut(s) 873
HinfI GANTC 3 cut(s) 227, 842, 874
HpaII CCGG 1 cut(s) 780
HphI GGTGA 2 cut(s) 1020, 1059
Hpy166II GTNNAC 2 cut(s) 859, 873
Hpy188I TCNGA 7 cut(s) 59, 217, 232, 419, 493, 777, 1112
Hpy8I GTNNAC 2 cut(s) 859, 873
HpyAV CCTTC 7 cut(s) 126, 311, 403, 627, 787, 891, 982
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4V TGCA 8 cut(s) 262, 661, 682, 758, 830, 938, 980, 1061
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 280, 292, 494, 827
HpyF3I CTNAG 3 cut(s) 275, 296, 569
Hsp92II CATG 5 cut(s) 473, 560, 865, 911, 973
HspAI GCGC 1 cut(s) 967
KflI GGGWCCC 1 cut(s) 388
KpnI GGTACC 2 cut(s) 163, 532
Kzo9I GATC 5 cut(s) 232, 616, 732, 805, 991
LmnI GCTCC 4 cut(s) 98, 196, 587, 1112
Lsp1109I GCAGC 7 cut(s) 211, 270, 274, 691, 731, 842, 1087
LweI GCATC 2 cut(s) 211, 484
MaeI CTAG 2 cut(s) 498, 728
MalI GATC 5 cut(s) 234, 618, 734, 807, 993
MboI GATC 5 cut(s) 232, 616, 732, 805, 991
MboII GAAGA 4 cut(s) 24, 36, 316, 355
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 3 cut(s) 616, 732, 991
MhlI GDGCHC 1 cut(s) 786
MlsI TGGCCA 1 cut(s) 1078
MluCI AATT 4 cut(s) 67, 191, 672, 1005
MluNI TGGCCA 1 cut(s) 1078
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 2 cut(s) 456, 1090
Mox20I TGGCCA 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 2 cut(s) 74, 740
MslI CAYNNNNRTG 2 cut(s) 750, 1072
Msp20I TGGCCA 1 cut(s) 1078
MspA1I CMGCKG 2 cut(s) 833, 932
MspI CCGG 1 cut(s) 780
MspR9I CCNGG 6 cut(s) 354, 384, 545, 693, 781, 790
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 2 cut(s) 145, 832
MvaI CCWGG 5 cut(s) 354, 384, 545, 693, 790
MwoI GCNNNNNNNGC 5 cut(s) 271, 280, 292, 494, 827
NciI CCSGG 1 cut(s) 781
NdeII GATC 5 cut(s) 232, 616, 732, 805, 991
NlaIII CATG 5 cut(s) 473, 560, 865, 911, 973
NlaIV GGNNCC 9 cut(s) 161, 389, 390, 530, 618, 734, 802, 952, 1114
OliI CACNNNNGTG 2 cut(s) 750, 1072
PasI CCCWGGG 1 cut(s) 383
PctI GAATGC 2 cut(s) 145, 832
PfeI GAWTC 2 cut(s) 227, 842
PfoI TCCNGGA 1 cut(s) 788
PkrI GCNGC 7 cut(s) 201, 264, 285, 706, 721, 832, 1102
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 5 cut(s) 352, 382, 543, 691, 788
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 5 cut(s) 352, 382, 543, 691, 788
PspN4I GGNNCC 9 cut(s) 161, 389, 390, 530, 618, 734, 802, 952, 1114
PspPI GGNCC 5 cut(s) 350, 380, 388, 901, 951
PspPPI RGGWCCY 1 cut(s) 388
PsuI RGATCY 3 cut(s) 616, 732, 991
PvuII CAGCTG 2 cut(s) 833, 932
RsaI GTAC 3 cut(s) 161, 426, 530
RsaNI GTAC 3 cut(s) 160, 425, 529
RseI CAYNNNNRTG 2 cut(s) 750, 1072
SalI GTCGAC 1 cut(s) 871
SaqAI TTAA 2 cut(s) 74, 740
SatI GCNGC 7 cut(s) 200, 263, 284, 705, 720, 831, 1101
Sau3AI GATC 5 cut(s) 232, 616, 732, 805, 991
Sau96I GGNCC 5 cut(s) 350, 380, 388, 901, 951
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 6 cut(s) 354, 384, 545, 693, 781, 790
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 2 cut(s) 211, 484
SinI GGWCC 3 cut(s) 388, 901, 951
SmiMI CAYNNNNRTG 2 cut(s) 750, 1072
Sse9I AATT 4 cut(s) 67, 191, 672, 1005
SspMI CTAG 2 cut(s) 498, 728
StyD4I CCNGG 6 cut(s) 352, 382, 543, 691, 779, 788
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 1 cut(s) 595
TaqI TCGA 2 cut(s) 676, 872
TasI AATT 4 cut(s) 67, 191, 672, 1005
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 2 cut(s) 227, 842
Tru1I TTAA 2 cut(s) 74, 740
Tru9I TTAA 2 cut(s) 74, 740
TscAI CASTG 4 cut(s) 179, 382, 627, 706
TseI GCWGC 7 cut(s) 199, 262, 283, 704, 719, 830, 1100
TspDTI ATGAA 2 cut(s) 573, 1017
TspRI CASTG 4 cut(s) 179, 382, 627, 706
VpaK11BI GGWCC 3 cut(s) 388, 901, 951
XapI RAATTY 1 cut(s) 672
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmiI GTMKAC 2 cut(s) 858, 872
XspI CTAG 2 cut(s) 498, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.