Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Forward (+)

15017435 .. 15017863

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0110800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATTTTGGAGAAACTGAAGAAGCTCAAGACCTCTGATGACCATTCTGCTGAAAGGCTGCTCGAACAGATCGAATCTTTGCGCAATGAGTACGAAAATACGCTCGAAAATTCTGAACTCGTGATAGAAGAGATTGAGAAGGAGCATGAACGTGCAAGTGCTCTGGAAAAACGAAAAACAAAGAAAAATAAACGCACTGCAACAATTTTGCTCATTTCCGGCACTCTGGCAGCTACTATGGTTGGTCATCCACACATAGGTGTCGCTGCCGCTATGGTTGTTTGTCGACAAGTTTCTAAAGCCTGTAGCTCAAGAACTAAAGAGGAAGAACAACGACATGAAATTGCTCTCAAGGCTCACTACTCAATGGAAGGAAAAATGATTGTTAGCATTAAGGAGCTGGGCAGCATTAAGTTTCTCATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

142

Amino Acids

16.08

Weight (kDa)

8.51

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	257
AleI	CACNNNNGTG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	25, 233, 309, 400
AluI	AGCT	4 cut(s)	25, 233, 309, 400
Alw21I	GWGCWC	1 cut(s)	163
ApeKI	GCWGC	4 cut(s)	58, 230, 266, 405
ApoI	RAATTY	1 cut(s)	109
AseI	ATTAAT	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	45, 242, 253, 417
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	5 cut(s)	59, 231, 267, 270, 406
BlsI	GCNGC	5 cut(s)	60, 232, 268, 271, 407
BpuEI	CTTGAG	3 cut(s)	11, 295, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	91
BseXI	GCAGC	4 cut(s)	45, 242, 253, 417
BseYI	CCCAGC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	91
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	4 cut(s)	45, 242, 253, 417
BtsCI	GGATG	1 cut(s)	247
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	146, 338
CviJI	RGCY	7 cut(s)	25, 58, 233, 302, 309, 356, 400
CviKI_1	RGCY	7 cut(s)	25, 58, 233, 302, 309, 356, 400
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	38
FaeI	CATG	2 cut(s)	149, 341
FaiI	YATR	5 cut(s)	147, 239, 257, 275, 339
FatI	CATG	2 cut(s)	145, 337
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	5 cut(s)	59, 231, 267, 270, 406
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	5 cut(s)	59, 231, 267, 270, 406
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	59, 231, 267, 270, 406
GsaI	CCCAGC	1 cut(s)	404
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	149, 341
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	37, 115
Hpy188III	TCNNGA	4 cut(s)	28, 121, 164, 312
Hpy8I	GTNNAC	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	133, 365
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	155, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	149, 341
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	142, 397
LpnPI	CCDG	5 cut(s)	149, 212, 232, 316, 386
Lsp1109I	GCAGC	4 cut(s)	45, 242, 253, 417
MaeII	ACGT	1 cut(s)	151
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	31, 140, 338
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	4 cut(s)	109, 204, 342, 424
MnlI	CCTC	2 cut(s)	43, 316
MseI	TTAA	3 cut(s)	393, 411, 423
MslI	CAYNNNNRTG	2 cut(s)	150, 258
MspI	CCGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	149, 341
NsbI	TGCGCA	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	60, 232, 268, 271, 407
PshBI	ATTAAT	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	400
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	150, 258
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	393, 411, 423
SatI	GCNGC	5 cut(s)	59, 231, 267, 270, 406
Sau3AI	GATC	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	27, 35, 154, 235, 262, 311, 402
SfcI	CTRYAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	150, 258
SmlI	CTYRAG	3 cut(s)	26, 310, 350
SmoI	CTYRAG	3 cut(s)	26, 310, 350
Sse9I	AATT	4 cut(s)	109, 204, 342, 424
SsiI	CCGC	1 cut(s)	270
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	63, 72, 105, 286
TasI	AATT	4 cut(s)	109, 204, 342, 424
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	393, 411, 423
Tru9I	TTAA	3 cut(s)	393, 411, 423
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	4 cut(s)	58, 230, 266, 405
TspDTI	ATGAA	2 cut(s)	162, 354
TspRI	CASTG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.