Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017573.1

Orthogroup ID

OG0002225

Physical Location & Seq

Genomic Coordinates Forward (+)

1441 .. 5143

Gene Structure 3703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017573.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggctcttgtcagtaggcttcaatctctgtcttcctctttgtcttccacccatttcagaaaacccagttccttaaaccctcaacccatttgctccctacacttcaacaactccccttcttacacttctccttttacagagaagcattctattgagagataccagagagaccagtggctatacaataaccaattggagcagcccactctattctctgatgatgctgattctgatctcacaaggcagaatgacattgctttgcagctaccagagctgagaaagctgcttcaggtgctaagagagaagagagagagggaaggagggtgtggtggaggaggaggcaagtgtgggcctggcaatgtcttcttggtcggcactggccctggggaccctgaactcctcacattgaaggctgtcagagttgtacagagtgctgatttattgttgtatgataggttggtgtccaatcatgtgttggattttgttgcctctgatgctagacttgtctatgtgggcaagactgctgggtaccatagcagaacccaggaggagatacatgaactgctactgagttttgctgaagctggagctactgttgtgagactaaaaggaggggatccactggtgtttggaaggggtggagaggagatggattttttgcaacagcaaggaattcgagtgcaagttattccaggtatcactgctgcttctgggatagcagcagagctagggatcccattaactcacagaggtgttgcaaatagtgtaagatttctgaccgggcactccaggaagggaggaacggatcctctttttgtggcagagaatgcagctgaccctgattcaaccttggtggtatacatgggtttgtcgactctcccttctcttgctcaaaagttggtccatcatggtctgccaccaacaacaccagctgttgcagttgagcgagggaccacacctcaacagcgcatggtctttgcagaactgaaggatcttgccaatgaaattacattagcagagttagtatcaccaacgctcatcgtcattgggaaagtagttgcactttcaccattgtggccacataatttgaatgaagtgacctctcttgttggagccatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

TP_methylase

Protein Analysis

373

Amino Acids

40.3

Weight (kDa)

6.13

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40850 AT5G40850 AT5G40850
fragaria_vesca	FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480 FvH4_7g00480
malus_domestica	MD07G1002800.v1.1
prunus_persica	Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.2G005900_v2.0.a1 Prupe.I005100_v2.0.a1
pyrus_communis	pycom02g26670 pycom07g00280
rosa_chinensis	RchiOBHm_Chr1g0314251 RchiOBHm_Chr4g0408791 RchiOBHm_Chr6g0277781
rosa_laevigata	RLG00000013272 RLG00000030770
rosa_multiflora	Rmu_sc0002211.1_g000012 Rmu_sc0006114.1_g000007 Rmu_sc0008256.1_g000002 Rmu_sc0013258.1_g000003 Rmu_sc0017573.1_g000002 Rmu_sc0038479.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332000 Rroxscaffold_7G00190980
rosa_rugosa	Rorug01G0000600 Rorug06G0110800 Rorug06G0110900
rosa_samantha	Rh1BG002400 Rh1BG268900 Rh1CG009600 Rh1CG009900 Rh4BG149300 Rh6AG221700 Rh6BG225200 Rh6CG227900 Rh6DG218900
rosa_wichuraiana	Rw1G000410 Rw6G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccI	GTMKAC	2 cut(s)	858, 872
AclWI	GGATC	7 cut(s)	611, 624, 727, 740, 800, 813, 999
AcoI	YGGCCR	1 cut(s)	1076
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	3 cut(s)	272, 600, 1007
AfaI	GTAC	2 cut(s)	426, 530
AgsI	TTSAA	5 cut(s)	23, 106, 409, 846, 1090
AjnI	CCWGG	5 cut(s)	352, 382, 543, 691, 788
AleI	CACNNNNGTG	2 cut(s)	750, 1072
AluBI	AGCT	8 cut(s)	265, 274, 283, 584, 590, 727, 833, 932
AluI	AGCT	8 cut(s)	265, 274, 283, 584, 590, 727, 833, 932
Alw26I	GTCTC	2 cut(s)	162, 595
AlwI	GGATC	7 cut(s)	611, 624, 727, 740, 800, 813, 999
AoxI	GGCC	3 cut(s)	350, 379, 1076
ApeKI	GCWGC	6 cut(s)	199, 262, 283, 704, 719, 830
ApoI	RAATTY	1 cut(s)	672
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	969
AspS9I	GGNCC	5 cut(s)	350, 380, 388, 901, 951
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	2 cut(s)	1020, 1059
AvaII	GGWCC	3 cut(s)	388, 901, 951
BaeGI	GKGCMC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	1078
BamHI	GGATCC	3 cut(s)	616, 732, 805
BanI	GGYRCC	1 cut(s)	528
BbsI	GAAGAC	3 cut(s)	24, 36, 355
BbvI	GCAGC	6 cut(s)	211, 270, 274, 691, 731, 842
BccI	CCATC	2 cut(s)	643, 912
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	5 cut(s)	354, 384, 545, 693, 790
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	162, 595
BfaI	CTAG	2 cut(s)	498, 728
BisI	GCNGC	6 cut(s)	200, 263, 284, 705, 720, 831
BlsI	GCNGC	6 cut(s)	201, 264, 285, 706, 721, 832
Bme1390I	CCNGG	6 cut(s)	354, 384, 545, 693, 781, 790
Bme18I	GGWCC	3 cut(s)	388, 901, 951
BmgT120I	GGNCC	5 cut(s)	350, 380, 388, 901, 951
BmiI	GGNNCC	8 cut(s)	389, 390, 530, 618, 734, 807, 952, 1114
BmrFI	CCNGG	6 cut(s)	354, 384, 545, 693, 781, 790
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	211, 484
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	3 cut(s)	24, 36, 355
BpmI	CTGGAG	2 cut(s)	606, 772
BpuMI	CCSGG	1 cut(s)	781
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	382, 383, 543, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bse1I	ACTGG	4 cut(s)	66, 172, 382, 627
Bse3DI	GCAATG	2 cut(s)	252, 364
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	5 cut(s)	354, 384, 545, 693, 790
BseDI	CCNNGG	4 cut(s)	382, 383, 543, 849
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	252, 364
BseMII	CTCAG	2 cut(s)	266, 560
BseNI	ACTGG	4 cut(s)	66, 172, 382, 627
BseRI	GAGGAG	5 cut(s)	348, 351, 389, 563, 659
BseSI	GKGCMC	1 cut(s)	786
BseXI	GCAGC	6 cut(s)	211, 270, 274, 691, 731, 842
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	3 cut(s)	352, 381, 1078
BshNI	GGYRCC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	780
BslFI	GGGAC	2 cut(s)	401, 964
BsmAI	GTCTC	2 cut(s)	162, 595
BsmFI	GGGAC	2 cut(s)	401, 964
BsmI	GAATGC	2 cut(s)	145, 832
BsnI	GGCC	3 cut(s)	352, 381, 1078
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	786
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	5 cut(s)	232, 616, 732, 805, 991
BspANI	GGCC	3 cut(s)	352, 381, 1078
BspCNI	CTCAG	2 cut(s)	267, 561
BspLI	GGNNCC	8 cut(s)	389, 390, 530, 618, 734, 807, 952, 1114
BspPI	GGATC	7 cut(s)	611, 624, 727, 740, 800, 813, 999
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	252, 364
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	4 cut(s)	66, 172, 382, 627
BssECI	CCNNGG	4 cut(s)	382, 383, 543, 849
BssMI	GATC	5 cut(s)	232, 616, 732, 805, 991
BssNAI	GTATAC	1 cut(s)	859
BssT1I	CCWWGG	1 cut(s)	849
Bst1107I	GTATAC	1 cut(s)	859
Bst2UI	CCWGG	5 cut(s)	354, 384, 545, 693, 790
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	275, 296, 569
BstHHI	GCGC	1 cut(s)	969
BstKTI	GATC	5 cut(s)	235, 619, 735, 808, 994
BstMAI	GTCTC	2 cut(s)	162, 595
BstMBI	GATC	5 cut(s)	232, 616, 732, 805, 991
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 280, 292, 494, 827
BstNI	CCWGG	5 cut(s)	354, 384, 545, 693, 790
BstSCI	CCNGG	6 cut(s)	352, 382, 543, 691, 779, 788
BstSLI	GKGCMC	1 cut(s)	786
BstV1I	GCAGC	6 cut(s)	211, 270, 274, 691, 731, 842
BstV2I	GAAGAC	3 cut(s)	24, 36, 355
BstX2I	RGATCY	4 cut(s)	616, 732, 805, 991
BstYI	RGATCY	4 cut(s)	616, 732, 805, 991
BstZ17I	GTATAC	1 cut(s)	859
BsuRI	GGCC	3 cut(s)	352, 381, 1078
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	4 cut(s)	179, 375, 620, 699
CfoI	GCGC	1 cut(s)	969
Cfr13I	GGNCC	5 cut(s)	350, 380, 388, 901, 951
Csp6I	GTAC	2 cut(s)	425, 529
CspCI	CAANNNNNGTGG	4 cut(s)	834, 869, 1068, 1103
CviAII	CATG	5 cut(s)	470, 557, 862, 908, 970
CviQI	GTAC	2 cut(s)	425, 529
DdeI	CTNAG	3 cut(s)	275, 296, 569
DpnI	GATC	5 cut(s)	234, 618, 734, 807, 993
DpnII	GATC	5 cut(s)	232, 616, 732, 805, 991
EaeI	YGGCCR	1 cut(s)	1076
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	388, 901, 951
Eco57I	CTGAAG	3 cut(s)	272, 600, 1007
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	5 cut(s)	352, 382, 543, 691, 788
EcoT14I	CCWWGG	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	5 cut(s)	473, 560, 865, 911, 973
FaqI	GGGAC	2 cut(s)	401, 964
FatI	CATG	5 cut(s)	469, 556, 861, 907, 969
FblI	GTMKAC	2 cut(s)	858, 872
Fnu4HI	GCNGC	6 cut(s)	200, 263, 284, 705, 720, 831
Fsp4HI	GCNGC	6 cut(s)	200, 263, 284, 705, 720, 831
FspBI	CTAG	2 cut(s)	498, 728
GlaI	GCGC	1 cut(s)	968
GluI	GCNGC	6 cut(s)	200, 263, 284, 705, 720, 831
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	2 cut(s)	606, 772
HaeIII	GGCC	3 cut(s)	352, 381, 1078
HapII	CCGG	1 cut(s)	780
HhaI	GCGC	1 cut(s)	969
Hin1II	CATG	5 cut(s)	473, 560, 865, 911, 973
Hin6I	GCGC	1 cut(s)	967
HinP1I	GCGC	1 cut(s)	967
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HinfI	GANTC	3 cut(s)	227, 842, 874
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	2 cut(s)	1020, 1059
Hpy166II	GTNNAC	2 cut(s)	859, 873
Hpy188I	TCNGA	6 cut(s)	59, 217, 232, 419, 493, 777
Hpy8I	GTNNAC	2 cut(s)	859, 873
HpyAV	CCTTC	7 cut(s)	126, 311, 403, 627, 787, 891, 982
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	8 cut(s)	262, 661, 682, 758, 830, 938, 980, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 280, 292, 494, 827
HpyF3I	CTNAG	3 cut(s)	275, 296, 569
Hsp92II	CATG	5 cut(s)	473, 560, 865, 911, 973
HspAI	GCGC	1 cut(s)	967
KflI	GGGWCCC	1 cut(s)	388
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	5 cut(s)	232, 616, 732, 805, 991
LmnI	GCTCC	4 cut(s)	98, 196, 587, 1112
Lsp1109I	GCAGC	6 cut(s)	211, 270, 274, 691, 731, 842
LweI	GCATC	2 cut(s)	211, 484
MaeI	CTAG	2 cut(s)	498, 728
MaeIII	GTNAC	1 cut(s)	1096
MalI	GATC	5 cut(s)	234, 618, 734, 807, 993
MboI	GATC	5 cut(s)	232, 616, 732, 805, 991
MboII	GAAGA	4 cut(s)	24, 36, 316, 355
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	4 cut(s)	616, 732, 805, 991
MhlI	GDGCHC	1 cut(s)	786
MlsI	TGGCCA	1 cut(s)	1078
MluCI	AATT	4 cut(s)	191, 672, 1005, 1084
MluNI	TGGCCA	1 cut(s)	1078
MlyI	GAGTC	1 cut(s)	868
MmeI	TCCRAC	2 cut(s)	456, 1090
Mox20I	TGGCCA	1 cut(s)	1078
MscI	TGGCCA	1 cut(s)	1078
MseI	TTAA	2 cut(s)	74, 740
MslI	CAYNNNNRTG	2 cut(s)	750, 1072
Msp20I	TGGCCA	1 cut(s)	1078
MspA1I	CMGCKG	2 cut(s)	833, 932
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	6 cut(s)	354, 384, 545, 693, 781, 790
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	2 cut(s)	145, 832
MvaI	CCWGG	5 cut(s)	354, 384, 545, 693, 790
MwoI	GCNNNNNNNGC	5 cut(s)	271, 280, 292, 494, 827
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	5 cut(s)	232, 616, 732, 805, 991
NlaIII	CATG	5 cut(s)	473, 560, 865, 911, 973
NlaIV	GGNNCC	8 cut(s)	389, 390, 530, 618, 734, 807, 952, 1114
NmuCI	GTSAC	1 cut(s)	1096
OliI	CACNNNNGTG	2 cut(s)	750, 1072
PasI	CCCWGGG	1 cut(s)	383
PctI	GAATGC	2 cut(s)	145, 832
PfeI	GAWTC	2 cut(s)	227, 842
PfoI	TCCNGGA	1 cut(s)	788
PkrI	GCNGC	6 cut(s)	201, 264, 285, 706, 721, 832
PleI	GAGTC	1 cut(s)	868
PpsI	GAGTC	1 cut(s)	868
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	5 cut(s)	352, 382, 543, 691, 788
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	5 cut(s)	352, 382, 543, 691, 788
PspN4I	GGNNCC	8 cut(s)	389, 390, 530, 618, 734, 807, 952, 1114
PspPI	GGNCC	5 cut(s)	350, 380, 388, 901, 951
PspPPI	RGGWCCY	1 cut(s)	388
PsuI	RGATCY	4 cut(s)	616, 732, 805, 991
PvuII	CAGCTG	2 cut(s)	833, 932
RsaI	GTAC	2 cut(s)	426, 530
RsaNI	GTAC	2 cut(s)	425, 529
RseI	CAYNNNNRTG	2 cut(s)	750, 1072
SalI	GTCGAC	1 cut(s)	871
SaqAI	TTAA	2 cut(s)	74, 740
SatI	GCNGC	6 cut(s)	200, 263, 284, 705, 720, 831
Sau3AI	GATC	5 cut(s)	232, 616, 732, 805, 991
Sau96I	GGNCC	5 cut(s)	350, 380, 388, 901, 951
SchI	GAGTC	1 cut(s)	868
ScrFI	CCNGG	6 cut(s)	354, 384, 545, 693, 781, 790
SduI	GDGCHC	1 cut(s)	786
SfaNI	GCATC	2 cut(s)	211, 484
SinI	GGWCC	3 cut(s)	388, 901, 951
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1072
Sse9I	AATT	4 cut(s)	191, 672, 1005, 1084
SspMI	CTAG	2 cut(s)	498, 728
StyD4I	CCNGG	6 cut(s)	352, 382, 543, 691, 779, 788
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	676, 872
TasI	AATT	4 cut(s)	191, 672, 1005, 1084
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	227, 842
Tru1I	TTAA	2 cut(s)	74, 740
Tru9I	TTAA	2 cut(s)	74, 740
TscAI	CASTG	4 cut(s)	179, 382, 627, 706
TseFI	GTSAC	1 cut(s)	1096
TseI	GCWGC	6 cut(s)	199, 262, 283, 704, 719, 830
Tsp45I	GTSAC	1 cut(s)	1096
TspDTI	ATGAA	3 cut(s)	573, 1017, 1107
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	4 cut(s)	179, 382, 627, 706
VpaK11BI	GGWCC	3 cut(s)	388, 901, 951
XapI	RAATTY	1 cut(s)	672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmiI	GTMKAC	2 cut(s)	858, 872
XspI	CTAG	2 cut(s)	498, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.